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The Top 23 Rna Seq Gene Expression Open Source Projects

Open source projects categorized as Rna Seq Gene Expression
Categories > Gene Expression
Categories > Rna Seq
Salmon ⭐ 661
🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment
most recent commit 8 months ago
Nichenetr ⭐ 416
NicheNet: predict active ligand-target links between interacting cells
most recent commit 3 months ago
Powsimr ⭐ 102
Power analysis is essential to optimize the design of RNA-seq experiments and to assess and compare the power to detect differentially expressed genes. PowsimR is a flexible tool to simulate and evaluate differential expression from bulk and especially single-cell RNA-seq data making it suitable for a priori and posterior power analyses.
most recent commit 9 months ago
Epic ⭐ 68
Repository for the R package EPIC, to Estimate the Proportion of Immune and Cancer cells from bulk gene expression data.
most recent commit 9 months ago
Irap ⭐ 58
integrated RNA-seq Analysis Pipeline
most recent commit 5 years ago
Terminus ⭐ 43
most recent commit 2 years ago
Dgca ⭐ 38
Differential Gene Correlation Analysis
most recent commit 7 months ago
Haystack_bio ⭐ 35
Haystack: Epigenetic Variability and Transcription Factor Motifs Analysis Pipeline
most recent commit 3 years ago
Peca ⭐ 35
PECA is a software for inferring context specific gene regulatory network from paired gene expression and chromatin accessibility data
most recent commit 6 months ago
Grein ⭐ 30
GREIN : GEO RNA-seq Experiments Interactive Navigator
most recent commit 5 years ago
Rnaseq_titration_results ⭐ 29
Cross-platform normalization enables machine learning model training on microarray and RNA-seq data simultaneously
most recent commit a year ago
Volcano3d ⭐ 28
An R package to plot interactive three-way differential expression analysis
total releases 1most recent commit 8 months ago
Bird ⭐ 27
Big data Regression for predicting DNase I hypersensitivity
most recent commit a year ago
Asap ⭐ 24
ASAP : Automated Single-cell Analysis Pipeline
most recent commit 4 months ago
Rna Seq Tutorial For Gene Differential Expression Analysis ⭐ 24
This tutorial is created for educational purpose
most recent commit 4 months ago
Fishpond ⭐ 23
Differential expression and allelic analysis, nonparametric statistics
most recent commit 8 months ago
Rnaseq Pipeline ⭐ 18
RNA-seq pipeline for raw sequence alignment and transcript/gene quantification.
most recent commit 3 months ago
Microscope ⭐ 17
ChIP-seq/RNA-seq analysis software suite for gene expression heatmaps
most recent commit 7 years ago
Pipernaseq ⭐ 16
A comprehensive pipeline for RNAseq data analysis
most recent commit 5 months ago
Circompara ⭐ 12
🔬 A multi-method comparative bioinformatics pipeline to detect and study circRNAs from RNA-seq data
most recent commit 4 years ago
Npdr ⭐ 12
NPDR: Nearest-neighbor Projected-Distance Regression with the generalized linear model
most recent commit 10 months ago
Archive Ruvseq ⭐ 11
Archived version of RUVSeq
most recent commit 7 years ago
Gear ⭐ 10
The gEAR Portal was created as a data archive and viewer for gene expression data including microarrays, bulk RNA-Seq, single-cell RNA-Seq and more.
most recent commit 4 months ago
The 2 Latest Releases In Rna Seq Gene Expression Open Source Projects
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