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The Top 6 R Single Cell Gene Expression Open Source Projects

Open source projects categorized as R Single Cell Gene Expression
Categories > Gene Expression
Categories > Single Cell
Powsimr ⭐ 102
Power analysis is essential to optimize the design of RNA-seq experiments and to assess and compare the power to detect differentially expressed genes. PowsimR is a flexible tool to simulate and evaluate differential expression from bulk and especially single-cell RNA-seq data making it suitable for a priori and posterior power analyses.
most recent commit 9 months ago
Basics ⭐ 81
BASiCS: Bayesian Analysis of Single-Cell Sequencing Data. This is an unstable experimental version. Please see http://bioconductor.org/packages/BASiCS/ for the official release version
most recent commit 4 months ago
Meringue ⭐ 33
characterizing spatial gene expression heterogeneity in spatially resolved single-cell transcriptomics data with nonuniform cellular densities
most recent commit 2 years ago
Ouija ⭐ 29
Descriptive probabilistic marker gene approach to single-cell pseudotime inference
most recent commit 4 years ago
Clonealign ⭐ 25
Bayesian inference of clone-specific gene expression estimates by integrating single-cell RNA-seq and single-cell DNA-seq data
most recent commit 3 years ago
Switchde ⭐ 15
Inference of switch-like differential expression along single-cell trajectories
most recent commit 6 years ago
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