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The Top 23 Gene Open Source Projects

Open source projects categorized as Gene
Categories > Gene
Volcano ⭐ 3,577
A Cloud Native Batch System (Project under CNCF)
dependent packages 31total releases 113most recent commit 3 months ago
Augustus ⭐ 237
Genome annotation with AUGUSTUS
most recent commit 4 months ago
Ggcoverage ⭐ 187
Visualize and annotate genomic coverage with ggplot2
most recent commit 3 months ago
Gtz ⭐ 156
A high performance and compression ratio compressor for genomic data, powered by GTXLab of Genetalks.
most recent commit 2 years ago
Rnaseq Workflow ⭐ 133
A repository for setting up a RNAseq workflow
most recent commit 7 years ago
Lineage ⭐ 114
tools for genetic genealogy and the analysis of consumer DNA test results
total releases 38most recent commit a year ago
Mygene.info ⭐ 109
MyGene.info: A BioThings API for gene annotations
most recent commit 3 months ago
Cmappy ⭐ 86
Assorted tools for interacting with .gct, .gctx files and other Connectivity Map (Broad Institute) data/tools
dependent packages 5total releases 36most recent commit 2 years agopypi cmapPy} Downloads
Genefuse ⭐ 86
Gene fusion detection and visualization
most recent commit 2 years ago
Biolink Api ⭐ 53
API for linked biological knowledge
most recent commit 2 years ago
Gencode_regions ⭐ 52
Extract 3'UTR, 5'UTR, CDS, Promoter, Genes, Introns, Exons from GTF files
most recent commit 3 years ago
Genotify ⭐ 51
A minimal desktop app for easy and convenient gene annotation.
most recent commit 4 years ago
Genelab_data_processing ⭐ 50
most recent commit 3 months ago
Transplotr ⭐ 45
An elegant package to visualize gene structures
total releases 1most recent commit a year ago
Gvanno ⭐ 43
Generic human DNA variant annotation pipeline
most recent commit 4 months ago
Recount ⭐ 40
R package for the recount2 project. Documentation website: http://leekgroup.github.io/recount/
most recent commit a year ago
Camoco ⭐ 40
Camoco is a fully-fledged software package for building co-expression networks and analyzing the overlap interactions among genes.
dependent packages 1total releases 14most recent commit 10 months agopypi camoco} Downloads
Genekitr ⭐ 37
🧬 Gene analysis toolkit based on R
total releases 12most recent commit 8 months ago
Hmmer2go ⭐ 36
Annotate DNA sequences for Gene Ontology terms
most recent commit 2 years ago
Haystack_bio ⭐ 35
Haystack: Epigenetic Variability and Transcription Factor Motifs Analysis Pipeline
most recent commit 3 years ago
Orthogene ⭐ 31
🧬 o r t h o g e n e 🧬✨✨✨✨✨✨✨ Interspecies gene mapping✨✨✨✨✨ 🦠 🔁 🌱 🔁 🌳 🔁 🍎 🔁 🍊 🔁 🪱 🔁 🪰 🔁 🐟 🔁 🦎 🔁 🐓 🔁 🦇 🔁 🐄 🔁 🐖 🔁 🐐 🔁 🐎 🔁 🐈 🔁 🐕 🔁 🐁 🔁 🐒 🔁 🦧 🔁 🦍 🔁 🏃‍♀️
most recent commit 4 months ago
Gene ⭐ 30
Grace, fastest, flexibility, simple PHP extension framework！优雅、极速、灵活、简单的PHP扩展框架！
most recent commit a year ago
Pygtftk ⭐ 30
A python package and a set of shell commands to handle GTF files
total releases 29most recent commit a year ago
The 5 Most Depended On Gene Open Source Projects
Volcano ⭐ 3,577
A Cloud Native Batch System (Project under CNCF)
dependent packages 31total releases 113latest release September 25, 2023most recent commit 3 months ago
Amigo ⭐ 28
AmiGO is the public interface for the Gene Ontology.
dependent packages 7total releases 12latest release November 14, 2015most recent commit 3 months agonpm amigo2} Downloads
Cmappy ⭐ 86
Assorted tools for interacting with .gct, .gctx files and other Connectivity Map (Broad Institute) data/tools
dependent packages 5total releases 36latest release February 08, 2019most recent commit 2 years agopypi cmapPy} Downloads
Phenogrid ⭐ 8
The phenogrid widget
dependent packages 4total releases 49latest release January 28, 2022most recent commit 2 years agonpm phenogrid} Downloads
Camoco ⭐ 40
Camoco is a fully-fledged software package for building co-expression networks and analyzing the overlap interactions among genes.
dependent packages 1total releases 14latest release November 12, 2019most recent commit 10 months agopypi camoco} Downloads
The 10 Latest Releases In Gene Open Source Projects
Patientmatcher ⭐ 11
A MatchMaker Exchange server
total releases 25latest release November 07, 2023most recent commit 4 months ago
Volcano ⭐ 3,577
A Cloud Native Batch System (Project under CNCF)
dependent packages 31total releases 113latest release September 25, 2023most recent commit 3 months ago
Genekitr ⭐ 37
🧬 Gene analysis toolkit based on R
total releases 12latest release September 07, 2023most recent commit 8 months ago
Transplotr ⭐ 45
An elegant package to visualize gene structures
total releases 1latest release August 30, 2022most recent commit a year ago
Lineage ⭐ 114
tools for genetic genealogy and the analysis of consumer DNA test results
total releases 38latest release June 07, 2022most recent commit a year ago
Phenogrid ⭐ 8
The phenogrid widget
dependent packages 4total releases 49latest release January 28, 2022most recent commit 2 years agonpm phenogrid} Downloads
Digitalcellsorter ⭐ 14
Digital Cell Sorter (DCS): single cell RNA-seq analysis toolkit. Documentation:
total releases 36latest release March 26, 2021most recent commit 3 years ago
Camoco ⭐ 40
Camoco is a fully-fledged software package for building co-expression networks and analyzing the overlap interactions among genes.
dependent packages 1total releases 14latest release November 12, 2019most recent commit 10 months agopypi camoco} Downloads
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