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The Top 15 Gatk Open Source Projects

Open source projects categorized as Gatk
Categories > Gatk
Gatk ⭐ 1,576
Official code repository for GATK versions 4 and up
dependent packages 2total releases 46most recent commit a month ago
Learning_vcf_file ⭐ 122
Learning the Variant Call Format
most recent commit 7 months ago
Genomicsdb ⭐ 88
High performance data storage for importing, querying and transforming variants.
dependent packages 2total releases 35most recent commit 3 months ago
Callings Nf ⭐ 76
GATK RNA-Seq Variant Calling in Nextflow
most recent commit 3 years ago
Gatk4 Somatic Snvs Indels ⭐ 54
This repo will be archived soon, these workflows will be housed in the GATK repository under the scripts directory. These workflows are also organized in Dockstore in the GATK Best Practices Workflows collection.
most recent commit 4 years ago
Teamteri ⭐ 50
Genomics (computational bioinformatic data analysis) running on GCP, AWS or Azure
most recent commit 8 months ago
Ngs_pipeline ⭐ 31
Exome/Capture/RNASeq Pipeline Implementation using snakemake
most recent commit 6 years ago
Ngs Variants Training ⭐ 22
GitHub for the SIB courses NGS - Genome variant analysis
most recent commit 5 months ago
Alignment Nf ⭐ 18
Whole Exome/Whole Genome Sequencing alignment pipeline
most recent commit 3 years ago
Biopet ⭐ 15
Biopet docs
most recent commit 6 years ago
Sentieon Dnaseq ⭐ 15
Sentieon DNAseq
most recent commit 3 years ago
Gatk Flow ⭐ 10
Nextflow implementation of the GATK HaplotypeCaller pipeline
most recent commit 3 months ago
Bioluigi ⭐ 9
Reusable and maintained Luigi tasks to incorporate in bioinformatics pipelines
total releases 20most recent commit 6 months ago
Gatk Cwl Generator ⭐ 6
Generates CWL files from the GATK documentation
most recent commit 6 years ago
Genotype Collector And Snp Dataset Creator ⭐ 5
Collecting Genotypes from ENA and make their SNPs
most recent commit 3 years ago
The 2 Most Depended On Gatk Open Source Projects
Genomicsdb ⭐ 88
High performance data storage for importing, querying and transforming variants.
dependent packages 2total releases 35latest release October 12, 2023most recent commit 3 months ago
Gatk ⭐ 1,576
Official code repository for GATK versions 4 and up
dependent packages 2total releases 46latest release March 16, 2023most recent commit a month ago
The 3 Latest Releases In Gatk Open Source Projects
Genomicsdb ⭐ 88
High performance data storage for importing, querying and transforming variants.
dependent packages 2total releases 35latest release October 12, 2023most recent commit 3 months ago
Bioluigi ⭐ 9
Reusable and maintained Luigi tasks to incorporate in bioinformatics pipelines
total releases 20latest release October 03, 2023most recent commit 6 months ago
Gatk ⭐ 1,576
Official code repository for GATK versions 4 and up
dependent packages 2total releases 46latest release March 16, 2023most recent commit a month ago
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