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The Top 21 Sam Fastq Open Source Projects

Open source projects categorized as Sam Fastq
Gtz ⭐ 156
A high performance and compression ratio compressor for genomic data, powered by GTXLab of Genetalks.
most recent commit 2 years ago
Genozip ⭐ 144
A modern compressor for genomic files (FASTQ, SAM/BAM/CRAM, VCF, FASTA, GFF/GTF/GVF, 23andMe...), up to 5x better than gzip and faster too
total releases 132most recent commit 3 months ago
Fastqp ⭐ 94
Simple FASTQ quality assessment using Python
most recent commit 3 years ago
Pandaseq ⭐ 91
PAired-eND Assembler for DNA sequences
most recent commit 3 years ago
Cljam ⭐ 87
A DNA Sequence Alignment/Map (SAM) library for Clojure
total releases 37most recent commit 3 months ago
Umicollapse ⭐ 44
Accelerating the deduplication and collapsing process for reads with Unique Molecular Identifiers (UMI). Heavily optimized for scalability and orders of magnitude faster than a previous tool.
most recent commit 10 months ago
Fuc ⭐ 38
Frequently used commands in bioinformatics
dependent packages 2total releases 44most recent commit 8 months agopypi fuc} Downloads
Fasta_utilities ⭐ 37
A collection of scripts developed to interact with fasta, fastq and sam/bam files.
most recent commit 8 years ago
Blast2bam ⭐ 33
Blast2Bam uses the XML results of Blastn, the reference and the fastQ or fasta file(s) to output a SAM file.
most recent commit 3 years ago
Bioview ⭐ 27
Readability enhancement tool for bioinformatics data file format
most recent commit 4 years ago
Proc10xg ⭐ 16
processing 10x genomics reads
most recent commit 4 years ago
Dnacol ⭐ 16
Color DNA/RNA bases in terminal output
total releases 3most recent commit 7 years ago
Pheniqs ⭐ 16
Fast and accurate sequence demultiplexing
most recent commit 2 years ago
Fast5seek ⭐ 11
Subset of fast5 files contained in a fastq, BAM, or SAM file.
total releases 2most recent commit a year ago
Freehic ⭐ 8
FreeHi-C pipeline for high fidelity Hi-C data simulation.
most recent commit 3 years ago
Seq_file ⭐ 8
Library for Reading Bioinformatic Sequence Data in C
most recent commit 7 years ago
Seqkit ⭐ 7
Toolkit for manipulating FASTA and SAM files
most recent commit 2 years ago
Cplate ⭐ 7
Digestion template-based deconvolution for chromatin structure inference.
most recent commit 8 years ago
Tetools ⭐ 6
TE tools for TE RNASeq and smallRNASeq analysis with galaxy
most recent commit 3 years ago
Umi Analysis ⭐ 6
Scripts for processing Illumina sequence data containing unique molecular identifiers (UMI)
most recent commit 6 years ago
Bioinformatics One Liners ⭐ 5
📝 Useful bioinformatics one-line commands.
most recent commit 2 years ago
The 5 Latest Releases In Sam Fastq Open Source Projects
Fuc ⭐ 38
Frequently used commands in bioinformatics
dependent packages 2total releases 44latest release September 09, 2023most recent commit 8 months agopypi fuc} Downloads
Cljam ⭐ 87
A DNA Sequence Alignment/Map (SAM) library for Clojure
total releases 37latest release May 10, 2019most recent commit 3 months ago
Fast5seek ⭐ 11
Subset of fast5 files contained in a fastq, BAM, or SAM file.
total releases 2latest release October 19, 2018most recent commit a year ago
Dnacol ⭐ 16
Color DNA/RNA bases in terminal output
total releases 3latest release August 30, 2017most recent commit 7 years ago
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