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The Top 23 Genomics Fastq Open Source Projects

Open source projects categorized as Genomics Fastq
Categories > Fastq
Categories > Science > Genomics
Bwa Mem2 ⭐ 645
The next version of bwa-mem
most recent commit 4 months ago
Juicer ⭐ 313
A One-Click System for Analyzing Loop-Resolution Hi-C Experiments
most recent commit a year ago
Genomics ⭐ 154
A collection of scripts and notes related to genomics and bioinformatics
most recent commit 2 years ago
Genozip ⭐ 144
A modern compressor for genomic files (FASTQ, SAM/BAM/CRAM, VCF, FASTA, GFF/GTF/GVF, 23andMe...), up to 5x better than gzip and faster too
total releases 132most recent commit 3 months ago
Ngless ⭐ 141
NGLess: NGS with less work
total releases 5most recent commit a year ago
Viral Ngs ⭐ 129
Viral genomics analysis pipelines
most recent commit 4 years ago
Seqfu2 ⭐ 96
🚀 seqfu - Sequece Fastx Utilities
most recent commit 4 months ago
Assembly Stats ⭐ 92
Get assembly statistics from FASTA and FASTQ files
most recent commit a year ago
Cljam ⭐ 87
A DNA Sequence Alignment/Map (SAM) library for Clojure
total releases 37most recent commit 3 months ago
Fqgrep ⭐ 75
Grep for FASTQ files
total releases 2most recent commit 10 months ago
Fq ⭐ 54
Command line utility for manipulating Illumina-generated FASTQ files.
total releases 3most recent commit 5 months ago
Rattle ⭐ 51
Reference-free reconstruction and error correction of transcriptomes from Nanopore long-read sequencing
most recent commit 4 months ago
Dna Nn ⭐ 51
Model and predict short DNA sequence features with neural networks
most recent commit 5 years ago
Fastaq ⭐ 45
Python3 scripts to manipulate FASTA and FASTQ files
dependent packages 7total releases 21most recent commit 2 years agopypi pyfastaq} Downloads
Assembly_improvement ⭐ 39
Improve the quality of a denovo assembly by scaffolding and gap filling
most recent commit 4 years ago
Rna Seq_notes ⭐ 29
A continually expanding collection of RNA-seq tools
most recent commit 6 months ago
Mapache ⭐ 23
mapping pipeline for ancient DNA
most recent commit 4 months ago
Iliad ⭐ 21
ILIAD: A suite of automated Snakemake workflows for processing genomic data for downstream applications
most recent commit 4 months ago
Lariat ⭐ 21
Linked-Read Alignment Tool
most recent commit 5 years ago
Tiptoft ⭐ 20
Predict plasmids from uncorrected long read data
total releases 6most recent commit 4 years ago
10x_snakepipe ⭐ 17
A snakemake pipeline for 10X genomics cellranger
most recent commit a year ago
Bio Tradis ⭐ 15
A set of tools to analyse the output from TraDIS analyses
total releases 14most recent commit 9 months ago
Sixess ⭐ 14
🔬🐛 Rapid 16s rRNA identification from isolate FASTQ files
most recent commit 6 years ago
The 8 Latest Releases In Genomics Fastq Open Source Projects
Fqgrep ⭐ 75
Grep for FASTQ files
total releases 2latest release January 25, 2023most recent commit 10 months ago
Ngless ⭐ 141
NGLess: NGS with less work
total releases 5latest release September 19, 2022most recent commit a year ago
Tiptoft ⭐ 20
Predict plasmids from uncorrected long read data
total releases 6latest release December 05, 2019most recent commit 4 years ago
Bio Tradis ⭐ 15
A set of tools to analyse the output from TraDIS analyses
total releases 14latest release December 04, 2019most recent commit 9 months ago
Cljam ⭐ 87
A DNA Sequence Alignment/Map (SAM) library for Clojure
total releases 37latest release May 10, 2019most recent commit 3 months ago
Fq ⭐ 54
Command line utility for manipulating Illumina-generated FASTQ files.
total releases 3latest release April 22, 2018most recent commit 5 months ago
Fastaq ⭐ 45
Python3 scripts to manipulate FASTA and FASTQ files
dependent packages 7total releases 21latest release February 19, 2018most recent commit 2 years agopypi pyfastaq} Downloads
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