Awesome Open Source
Search
Programming Languages
Languages
All Categories
Categories
About

The Top 23 Genome Fastq Open Source Projects

Open source projects categorized as Genome Fastq
Categories > Fastq
Categories > Science > Genome
Bactopia ⭐ 281
A flexible pipeline for complete analysis of bacterial genomes
most recent commit 7 months ago
Pyfastx ⭐ 211
a python package for fast random access to sequences from plain and gzipped FASTA/Q files
dependent packages 20total releases 68most recent commit 5 months agopypi pyfastx} Downloads
Rasusa ⭐ 156
Randomly subsample sequencing reads to a specified coverage
total releases 11most recent commit 4 months ago
Viral Ngs ⭐ 129
Viral genomics analysis pipelines
most recent commit 4 years ago
Pipeline Structural Variation ⭐ 87
Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data
most recent commit 3 years ago
Genefuse ⭐ 86
Gene fusion detection and visualization
most recent commit 2 years ago
Mcclintock ⭐ 83
Meta-pipeline to identify transposable element insertions using next generation sequencing data
most recent commit 3 months ago
Nullarbor ⭐ 80
💾 📃 "Reads to report" for public health and clinical microbiology
most recent commit 4 years ago
Fastv ⭐ 56
An ultra-fast tool for identification of SARS-CoV-2 and other microbes from sequencing data. This tool can be used to detect viral infectious diseases, like COVID-19.
most recent commit 4 years ago
Metacache ⭐ 49
memory efficient, fast & precise taxnomomic classification system for metagenomic read mapping
most recent commit a year ago
W2rap Contigger ⭐ 44
An Illumina PE genome contig assembler, can handle large (17Gbp) complex (hexaploid) genomes.
most recent commit a year ago
Pauvre ⭐ 43
Pauvre: QC and genome browser plotting Oxford Nanopore and PacBio long reads.
dependent packages 2total releases 27most recent commit a year agopypi pauvre} Downloads
Antonie ⭐ 36
Antonie is an integrated, robust, reliable and fast processor of DNA reads
most recent commit 5 years ago
Bioinf Commons ⭐ 30
Bioinformatics library in Kotlin
most recent commit 3 months ago
Sff2fastq ⭐ 30
extract 454 Genome Sequencer reads from a SFF file and convert them into a FASTQ formatted output
most recent commit 9 years ago
Gem3 Mapper ⭐ 27
GEM-Mapper v3
most recent commit 4 years ago
Fqgrep ⭐ 25
An approximate sequence pattern matcher for FASTQ/FASTA files.
most recent commit 8 years ago
Fastq Scan ⭐ 24
Output FASTQ summary statistics in JSON format
most recent commit a year ago
Knife ⭐ 23
Known and Novel IsoForm Explorer. Statistically based splicing detection for circular and linear isoforms
most recent commit 7 years ago
Sisrs ⭐ 23
Site Identification from Short Read Sequences.
most recent commit 2 years ago
Nanolyse ⭐ 21
Remove lambda phage reads from a fastq file
most recent commit a year ago
Seqmule ⭐ 21
Automated human exome/genome variants detection from FASTQ files
most recent commit 3 years ago
Pipeline Umi Amplicon ⭐ 21
Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers
most recent commit a year ago
The 2 Most Depended On Genome Fastq Open Source Projects
Pyfastx ⭐ 211
a python package for fast random access to sequences from plain and gzipped FASTA/Q files
dependent packages 20total releases 68latest release November 25, 2023most recent commit 5 months agopypi pyfastx} Downloads
Pauvre ⭐ 43
Pauvre: QC and genome browser plotting Oxford Nanopore and PacBio long reads.
dependent packages 2total releases 27latest release May 04, 2021most recent commit a year agopypi pauvre} Downloads
The 8 Latest Releases In Genome Fastq Open Source Projects
Pyfastx ⭐ 211
a python package for fast random access to sequences from plain and gzipped FASTA/Q files
dependent packages 20total releases 68latest release November 25, 2023most recent commit 5 months agopypi pyfastx} Downloads
Rasusa ⭐ 156
Randomly subsample sequencing reads to a specified coverage
total releases 11latest release April 06, 2023most recent commit 4 months ago
Henipipe ⭐ 6
Pipeline for CnR, CnT
total releases 82latest release December 28, 2022most recent commit 10 months ago
Clipseqtools ⭐ 11
A suite for the analysis of CLIP-Seq datasets.
total releases 13latest release January 31, 2022most recent commit 2 years ago
Pauvre ⭐ 43
Pauvre: QC and genome browser plotting Oxford Nanopore and PacBio long reads.
dependent packages 2total releases 27latest release May 04, 2021most recent commit a year agopypi pauvre} Downloads
Biohansel ⭐ 21
Rapidly subtype microbial genomes using single-nucleotide variant (SNV) subtyping schemes
total releases 19latest release March 05, 2021most recent commit 3 years ago
Hichap_master ⭐ 9
An integrated package to process diploid Hi-C data
total releases 29latest release October 27, 2020most recent commit 2 years ago
Categories
Privacy | About | Terms | Follow Us On Twitter

Downloads, Dependent Repos, Dependent Packages, Total Releases, Latest Releases data powered by Libraries.io.

Copyright 2018-2024 Awesome Open Source.  All rights reserved.