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The Top 23 Fasta Vcf Open Source Projects

Open source projects categorized as Fasta Vcf
Categories > Fasta
Categories > Science > Vcf
Bioawk ⭐ 518
BWK awk modified for biological data
total releases 1most recent commit 2 years ago
Snippy ⭐ 408
✂️ ⚡ Rapid haploid variant calling and core genome alignment
most recent commit 6 months ago
Htsjdk ⭐ 271
A Java API for high-throughput sequencing data (HTS) formats.
dependent packages 87total releases 78most recent commit 4 months ago
Vcf2phylip ⭐ 216
Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis
most recent commit 9 months ago
Biosyntax ⭐ 184
Syntax highlighting for computational biology
most recent commit 3 years ago
Genomics ⭐ 154
A collection of scripts and notes related to genomics and bioinformatics
most recent commit 2 years ago
Genozip ⭐ 144
A modern compressor for genomic files (FASTQ, SAM/BAM/CRAM, VCF, FASTA, GFF/GTF/GVF, 23andMe...), up to 5x better than gzip and faster too
total releases 132most recent commit 3 months ago
Vcf Validator ⭐ 125
Validation suite for Variant Call Format (VCF) files, implemented using C++11
most recent commit 3 months ago
Cljam ⭐ 87
A DNA Sequence Alignment/Map (SAM) library for Clojure
total releases 37most recent commit 3 months ago
Haplogrep Cmd ⭐ 64
HaploGrep - mtDNA haplogroup classification. Supporting rCRS and RSRS.
most recent commit a year ago
Opengene.jl ⭐ 61
(No maintenance) OpenGene, core libraries for NGS data analysis and bioinformatics in Julia
most recent commit 2 years ago
Tiddit ⭐ 55
TIDDIT - structural variant calling
most recent commit 9 months ago
Transanno ⭐ 54
accurate LiftOver tool for new genome assemblies
most recent commit 5 months ago
Fuc ⭐ 38
Frequently used commands in bioinformatics
dependent packages 2total releases 44most recent commit 7 months agopypi fuc} Downloads
Svjedi ⭐ 36
SV genotyping with long reads
most recent commit 10 months ago
Biotoolbox ⭐ 27
Tools for querying and analysis of genomic data
most recent commit 7 months ago
Phenix ⭐ 27
Public Health England SNP calling pipeline.
total releases 2most recent commit 6 years ago
Vcf2fasta ⭐ 25
Converts a VCF file to a FASTA alignment provided a reference genome and a GFF file
most recent commit 3 months ago
Workshop Popgenome ⭐ 19
Tutorial about R package PopGenome
most recent commit 5 years ago
Ekidna ⭐ 19
Assembly based core genome SNP alignments for bacteria
most recent commit 4 years ago
Varifier ⭐ 13
Variant call verification
total releases 3most recent commit a year ago
Vsnp ⭐ 13
vSNP -- validate SNPs
most recent commit a year ago
Hadoopcnv ⭐ 12
HadoopCNV is a MapReduce-based copy number variation caller for genome sequencing data
most recent commit 7 years ago
The 2 Most Depended On Fasta Vcf Open Source Projects
Htsjdk ⭐ 271
A Java API for high-throughput sequencing data (HTS) formats.
dependent packages 87total releases 78latest release October 13, 2023most recent commit 4 months ago
Fuc ⭐ 38
Frequently used commands in bioinformatics
dependent packages 2total releases 44latest release September 09, 2023most recent commit 7 months agopypi fuc} Downloads
The 8 Latest Releases In Fasta Vcf Open Source Projects
Htsjdk ⭐ 271
A Java API for high-throughput sequencing data (HTS) formats.
dependent packages 87total releases 78latest release October 13, 2023most recent commit 4 months ago
Fuc ⭐ 38
Frequently used commands in bioinformatics
dependent packages 2total releases 44latest release September 09, 2023most recent commit 7 months agopypi fuc} Downloads
Varifier ⭐ 13
Variant call verification
total releases 3latest release April 08, 2021most recent commit a year ago
Bioawk ⭐ 518
BWK awk modified for biological data
total releases 1latest release March 03, 2021most recent commit 2 years ago
Cflib ⭐ 6
A library to create and handle counts files used with PoMo.
total releases 6latest release February 11, 2021most recent commit 3 months ago
Cljam ⭐ 87
A DNA Sequence Alignment/Map (SAM) library for Clojure
total releases 37latest release May 10, 2019most recent commit 3 months ago
Phenix ⭐ 27
Public Health England SNP calling pipeline.
total releases 2latest release March 13, 2018most recent commit 6 years ago
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