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The Top 23 Perl Fasta Open Source Projects

Open source projects categorized as Perl Fasta
Prokka ⭐ 415
⚡ ♒ Rapid prokaryotic genome annotation
most recent commit 3 years ago
Snippy ⭐ 408
✂️ ⚡ Rapid haploid variant calling and core genome alignment
most recent commit 6 months ago
Novoplasty ⭐ 140
NOVOPlasty - The organelle assembler and heteroplasmy caller
most recent commit 8 months ago
Pbmm2 ⭐ 133
A minimap2 frontend for PacBio native data formats
most recent commit 6 months ago
Mirdeep2 ⭐ 120
Discovering known and novel miRNAs from small RNA sequencing data
most recent commit 5 months ago
Readfq ⭐ 105
Fast multi-line FASTA/Q reader in several programming languages
most recent commit 5 years ago
Get_homologues ⭐ 98
GET_HOMOLOGUES: a versatile software package for pan-genome analysis
most recent commit 3 months ago
Phylosift ⭐ 68
Phylogenetic and taxonomic analysis for genomes and metagenomes
most recent commit 8 years ago
Plasflow ⭐ 61
Software for prediction of plasmid sequences in metagenomic assemblies
total releases 5most recent commit 3 years ago
Orthomcl Pipeline ⭐ 55
Automates running of OrthoMCL software from http://orthomcl.org/common/downloads/software/v2.0
most recent commit 4 years ago
Jupiterplot ⭐ 54
A Circos-based tool to visualize genome assembly consistency
most recent commit a year ago
Any2fasta ⭐ 54
Convert various sequence formats to FASTA
most recent commit 5 years ago
Catfasta2phyml ⭐ 52
Concatenates FASTA formatted files to one "phyml" (PHYLIP) formatted file
most recent commit a year ago
Sports1.1 ⭐ 42
Small non-coding RNA annotation Pipeline Optimized for rRNA- and tRNA-Derived Small RNAs
most recent commit 8 months ago
Assembly_improvement ⭐ 39
Improve the quality of a denovo assembly by scaffolding and gap filling
most recent commit 4 years ago
Fasta_utilities ⭐ 37
A collection of scripts developed to interact with fasta, fastq and sam/bam files.
most recent commit 8 years ago
Bac Genomics Scripts ⭐ 28
Collection of scripts for bacterial genomics
most recent commit 4 years ago
Biotoolbox ⭐ 27
Tools for querying and analysis of genomic data
most recent commit 7 months ago
Fastascripts ⭐ 26
Manipulate FASTA files
most recent commit 10 years ago
Sequence Manipulation ⭐ 26
A range of different perl scripts for manipulating sequences, conducting alignments, consensus sequences, changing formats
most recent commit 7 months ago
Fmap ⭐ 25
Functional Mapping and Analysis Pipeline for metagenomics and metatranscriptomics studies
most recent commit a year ago
Bio Viennangs ⭐ 23
A Perl extension and collection of utilities for Next-Generation Sequencing (NGS) data analysis
most recent commit 5 years ago
Ekidna ⭐ 19
Assembly based core genome SNP alignments for bacteria
most recent commit 5 years ago
The 2 Latest Releases In Perl Fasta Open Source Projects
Plasflow ⭐ 61
Software for prediction of plasmid sequences in metagenomic assemblies
total releases 5latest release May 25, 2018most recent commit 3 years ago
Mlst_check ⭐ 14
Multilocus sequence typing by blast using the schemes from PubMLST
total releases 13latest release March 03, 2017most recent commit 3 years ago
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