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The Top 23 Genomics Fasta Open Source Projects

Open source projects categorized as Genomics Fasta
Categories > Fasta
Categories > Science > Genomics
Pyfaidx ⭐ 427
Efficient pythonic random access to fasta subsequences
dependent packages 119total releases 86most recent commit 3 months agopypi pyfaidx} Downloads
Snippy ⭐ 408
✂️ ⚡ Rapid haploid variant calling and core genome alignment
most recent commit 6 months ago
Minigraph ⭐ 367
Proof-of-concept seq-to-graph mapper and graph generator
total releases 1most recent commit 4 months ago
Htsjdk ⭐ 271
A Java API for high-throughput sequencing data (HTS) formats.
dependent packages 87total releases 78most recent commit 4 months ago
Gfatools ⭐ 181
Tools for manipulating sequence graphs in the GFA and rGFA formats
most recent commit 6 months ago
Genomics ⭐ 154
A collection of scripts and notes related to genomics and bioinformatics
most recent commit 2 years ago
Genozip ⭐ 144
A modern compressor for genomic files (FASTQ, SAM/BAM/CRAM, VCF, FASTA, GFF/GTF/GVF, 23andMe...), up to 5x better than gzip and faster too
total releases 132most recent commit 3 months ago
Redundans ⭐ 121
Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes.
most recent commit 4 months ago
Sibeliaz ⭐ 113
A fast whole-genome aligner based on de Bruijn graphs
most recent commit 2 years ago
Seqfu2 ⭐ 96
🚀 seqfu - Sequece Fastx Utilities
most recent commit 4 months ago
Assembly Stats ⭐ 92
Get assembly statistics from FASTA and FASTQ files
most recent commit a year ago
Cljam ⭐ 87
A DNA Sequence Alignment/Map (SAM) library for Clojure
total releases 37most recent commit 3 months ago
Wgd ⭐ 74
Python package and CLI for whole-genome duplication related analyses
most recent commit 6 months ago
Cryfa ⭐ 51
A secure encryption tool for genomic data
most recent commit 2 years ago
Macrel ⭐ 48
Predict AMPs in (meta)genomes and peptides
most recent commit 4 months ago
Fastaq ⭐ 45
Python3 scripts to manipulate FASTA and FASTQ files
dependent packages 7total releases 21most recent commit 2 years agopypi pyfastaq} Downloads
Assembly_improvement ⭐ 39
Improve the quality of a denovo assembly by scaffolding and gap filling
most recent commit 4 years ago
Perf ⭐ 30
PERF is an Exhaustive Repeat Finder
total releases 15most recent commit 3 years ago
Bac Genomics Scripts ⭐ 28
Collection of scripts for bacterial genomics
most recent commit 4 years ago
Recognizer ⭐ 24
A tool for domain based annotation with databases from the Conserved Domains Database
most recent commit 4 months ago
Socru ⭐ 23
Order and orientation of complete bacterial genomes
most recent commit 4 months ago
Upimapi ⭐ 22
UniProt Id Mapping through API
most recent commit 4 months ago
Mapcomp ⭐ 18
Genetic Map Comparison
most recent commit a year ago
The 4 Most Depended On Genomics Fasta Open Source Projects
Pyfaidx ⭐ 427
Efficient pythonic random access to fasta subsequences
dependent packages 119total releases 86latest release September 22, 2023most recent commit 3 months agopypi pyfaidx} Downloads
Htsjdk ⭐ 271
A Java API for high-throughput sequencing data (HTS) formats.
dependent packages 87total releases 78latest release October 13, 2023most recent commit 4 months ago
Fastaq ⭐ 45
Python3 scripts to manipulate FASTA and FASTQ files
dependent packages 7total releases 21latest release February 19, 2018most recent commit 2 years agopypi pyfastaq} Downloads
Smof ⭐ 12
Explore and analyze biological sequence data
dependent packages 2total releases 12latest release July 18, 2022most recent commit a year agopypi smof} Downloads
The 9 Latest Releases In Genomics Fasta Open Source Projects
Htsjdk ⭐ 271
A Java API for high-throughput sequencing data (HTS) formats.
dependent packages 87total releases 78latest release October 13, 2023most recent commit 4 months ago
Pyfaidx ⭐ 427
Efficient pythonic random access to fasta subsequences
dependent packages 119total releases 86latest release September 22, 2023most recent commit 3 months agopypi pyfaidx} Downloads
Minigraph ⭐ 367
Proof-of-concept seq-to-graph mapper and graph generator
total releases 1latest release June 21, 2023most recent commit 4 months ago
Smof ⭐ 12
Explore and analyze biological sequence data
dependent packages 2total releases 12latest release July 18, 2022most recent commit a year agopypi smof} Downloads
Perf ⭐ 30
PERF is an Exhaustive Repeat Finder
total releases 15latest release June 14, 2022most recent commit 3 years ago
Cljam ⭐ 87
A DNA Sequence Alignment/Map (SAM) library for Clojure
total releases 37latest release May 10, 2019most recent commit 3 months ago
Fastaq ⭐ 45
Python3 scripts to manipulate FASTA and FASTQ files
dependent packages 7total releases 21latest release February 19, 2018most recent commit 2 years agopypi pyfastaq} Downloads
Mlst_check ⭐ 14
Multilocus sequence typing by blast using the schemes from PubMLST
total releases 13latest release March 03, 2017most recent commit 3 years ago
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