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The Top 23 Genome Fasta Open Source Projects

Open source projects categorized as Genome Fasta
Categories > Fasta
Categories > Science > Genome
Prokka ⭐ 415
⚡ ♒ Rapid prokaryotic genome annotation
most recent commit 3 years ago
Snippy ⭐ 408
✂️ ⚡ Rapid haploid variant calling and core genome alignment
most recent commit 6 months ago
Pyfastx ⭐ 211
a python package for fast random access to sequences from plain and gzipped FASTA/Q files
dependent packages 20total releases 68most recent commit 5 months agopypi pyfastx} Downloads
Soapdenovo2 ⭐ 197
Next generation sequencing reads de novo assembler.
most recent commit 5 months ago
Gtotree ⭐ 174
A user-friendly workflow for phylogenomics
most recent commit 5 months ago
Aligngraph ⭐ 165
Algorithm for secondary de novo genome assembly guided by closely related references
most recent commit 4 years ago
Rasusa ⭐ 156
Randomly subsample sequencing reads to a specified coverage
total releases 11most recent commit 4 months ago
Novoplasty ⭐ 140
NOVOPlasty - The organelle assembler and heteroplasmy caller
most recent commit 8 months ago
Badread ⭐ 124
a long read simulator that can imitate many types of read problems
most recent commit 3 months ago
Branch ⭐ 122
Boosting RNA-Seq assemblies with partial or related genomic sequences
most recent commit 10 years ago
Mirdeep2 ⭐ 120
Discovering known and novel miRNAs from small RNA sequencing data
most recent commit 5 months ago
Sibeliaz ⭐ 113
A fast whole-genome aligner based on de Bruijn graphs
most recent commit 2 years ago
Skesa ⭐ 99
SKESA assembler
most recent commit 3 months ago
Get_homologues ⭐ 98
GET_HOMOLOGUES: a versatile software package for pan-genome analysis
most recent commit 3 months ago
Mcclintock ⭐ 83
Meta-pipeline to identify transposable element insertions using next generation sequencing data
most recent commit 3 months ago
Mummer2circos ⭐ 79
Circular bacterial genome plots based on BLAST or NUCMER/PROMER alignments
most recent commit 4 months ago
Wgd ⭐ 74
Python package and CLI for whole-genome duplication related analyses
most recent commit 6 months ago
Genmap ⭐ 62
GenMap - Fast and Exact Computation of Genome Mappability
most recent commit 2 years ago
Dbg2olc ⭐ 60
The genome assembler that reduces the computational time of human genome assembly from 400,000 CPU hours to 2,000 CPU hours, utilizing long erroneous 3GS sequencing reads and short accurate NGS sequencing reads.
most recent commit 4 years ago
Fastv ⭐ 56
An ultra-fast tool for identification of SARS-CoV-2 and other microbes from sequencing data. This tool can be used to detect viral infectious diseases, like COVID-19.
most recent commit 4 years ago
Jupiterplot ⭐ 54
A Circos-based tool to visualize genome assembly consistency
most recent commit a year ago
Metacache ⭐ 49
memory efficient, fast & precise taxnomomic classification system for metagenomic read mapping
most recent commit a year ago
Isescan ⭐ 47
A python pipeline to identify IS (Insertion Sequence) elements in genome and metagenome
most recent commit 2 years ago
The 2 Most Depended On Genome Fasta Open Source Projects
Pyfastx ⭐ 211
a python package for fast random access to sequences from plain and gzipped FASTA/Q files
dependent packages 20total releases 68latest release November 25, 2023most recent commit 5 months agopypi pyfastx} Downloads
Fdog ⭐ 8
Feature-aware Directed OrtholoG search
dependent packages 1total releases 68latest release September 19, 2023most recent commit 4 months agopypi fdog} Downloads
The 10 Latest Releases In Genome Fasta Open Source Projects
Pyfastx ⭐ 211
a python package for fast random access to sequences from plain and gzipped FASTA/Q files
dependent packages 20total releases 68latest release November 25, 2023most recent commit 5 months agopypi pyfastx} Downloads
Fdog ⭐ 8
Feature-aware Directed OrtholoG search
dependent packages 1total releases 68latest release September 19, 2023most recent commit 4 months agopypi fdog} Downloads
Rasusa ⭐ 156
Randomly subsample sequencing reads to a specified coverage
total releases 11latest release April 06, 2023most recent commit 4 months ago
Henipipe ⭐ 6
Pipeline for CnR, CnT
total releases 82latest release December 28, 2022most recent commit 10 months ago
Perf ⭐ 30
PERF is an Exhaustive Repeat Finder
total releases 15latest release June 14, 2022most recent commit 3 years ago
Pymlst ⭐ 20
whole genome MLST analysis
total releases 5latest release June 13, 2022most recent commit 3 months ago
Varifier ⭐ 13
Variant call verification
total releases 3latest release April 08, 2021most recent commit a year ago
Biohansel ⭐ 21
Rapidly subtype microbial genomes using single-nucleotide variant (SNV) subtyping schemes
total releases 19latest release March 05, 2021most recent commit 3 years ago
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