Awesome Open Source
Search
Programming Languages
Languages
All Categories
Categories
About

The Top 23 Python Fasta Fastq Open Source Projects

Open source projects categorized as Python Fasta Fastq
Categories > Fasta
Categories > Fastq
Krakentools ⭐ 242
KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files
most recent commit 5 months ago
Pyfastx ⭐ 211
a python package for fast random access to sequences from plain and gzipped FASTA/Q files
dependent packages 20total releases 68most recent commit 5 months agopypi pyfastx} Downloads
Isoquant ⭐ 98
Transcript discovery and quantification with long RNA reads (Nanopores and PacBio)
most recent commit 4 months ago
Mcclintock ⭐ 83
Meta-pipeline to identify transposable element insertions using next generation sequencing data
most recent commit 3 months ago
Dnaio ⭐ 52
Efficiently read and write sequencing data from Python
dependent packages 15total releases 23most recent commit 3 months agopypi dnaio} Downloads
Fastaq ⭐ 45
Python3 scripts to manipulate FASTA and FASTQ files
dependent packages 7total releases 21most recent commit 2 years agopypi pyfastaq} Downloads
Fuc ⭐ 38
Frequently used commands in bioinformatics
dependent packages 2total releases 44most recent commit 8 months agopypi fuc} Downloads
Fastbio ⭐ 34
Deep learning library for biological sequences. Extension of Fastai and Pytorch.
total releases 8most recent commit 2 years ago
Demultiplex ⭐ 26
Versatile FASTA/FASTQ demultiplexer.
total releases 9most recent commit 7 months ago
Orfipy ⭐ 25
Fast and flexible ORF finder
total releases 4most recent commit 2 years ago
Ra ⭐ 23
This repository is deprecated, please use the link to the right.
most recent commit 5 years ago
Biohansel ⭐ 21
Rapidly subtype microbial genomes using single-nucleotide variant (SNV) subtyping schemes
total releases 19most recent commit 3 years ago
Reads For Assembly ⭐ 17
Simulate metagenomic short reads from one or more populations.
most recent commit 4 years ago
Kmer2snp ⭐ 16
most recent commit 3 years ago
Ngs Protocols ⭐ 15
Scripts to run several protocols to process and analyze Next-Generation Sequencing data
most recent commit 9 months ago
Enasearch ⭐ 15
A Python library for interacting with ENA's API
total releases 9most recent commit 4 years ago
Dnapi ⭐ 14
De novo adapter prediction algorithm for small RNA sequencing data
most recent commit 7 years ago
Tools ⭐ 14
A collection of command-line tools I wrote to make various repetitive tasks more convenient
most recent commit 4 months ago
Sequence Database Curator ⭐ 10
This program dereplicates and/or filter nucleotide and/or protein database from a list of names or sequences (by exact match).
most recent commit 5 years ago
Fastq_generator ⭐ 9
A suite of tools to generate random or mapped fastq files
most recent commit 2 years ago
Python ⭐ 8
most recent commit 7 months ago
Micado ⭐ 7
Looking for mutations in PacBio cancer data: an alignment-free method
most recent commit 7 years ago
Lava ⭐ 6
LAVA: Longitudinal Analysis of Viral Alleles
most recent commit 3 years ago
The 5 Most Depended On Python Fasta Fastq Open Source Projects
Pyfastx ⭐ 211
a python package for fast random access to sequences from plain and gzipped FASTA/Q files
dependent packages 20total releases 68latest release November 25, 2023most recent commit 5 months agopypi pyfastx} Downloads
Dnaio ⭐ 52
Efficiently read and write sequencing data from Python
dependent packages 15total releases 23latest release November 20, 2023most recent commit 3 months agopypi dnaio} Downloads
Fastaq ⭐ 45
Python3 scripts to manipulate FASTA and FASTQ files
dependent packages 7total releases 21latest release February 19, 2018most recent commit 2 years agopypi pyfastaq} Downloads
Fuc ⭐ 38
Frequently used commands in bioinformatics
dependent packages 2total releases 44latest release September 09, 2023most recent commit 8 months agopypi fuc} Downloads
Fasta ⭐ 5
This package enables you to deal with biological sequence files easily.
dependent packages 1total releases 20latest release January 18, 2023most recent commit 8 months agopypi fasta} Downloads
The 10 Latest Releases In Python Fasta Fastq Open Source Projects
Pyfastx ⭐ 211
a python package for fast random access to sequences from plain and gzipped FASTA/Q files
dependent packages 20total releases 68latest release November 25, 2023most recent commit 5 months agopypi pyfastx} Downloads
Dnaio ⭐ 52
Efficiently read and write sequencing data from Python
dependent packages 15total releases 23latest release November 20, 2023most recent commit 3 months agopypi dnaio} Downloads
Fuc ⭐ 38
Frequently used commands in bioinformatics
dependent packages 2total releases 44latest release September 09, 2023most recent commit 8 months agopypi fuc} Downloads
Fasta ⭐ 5
This package enables you to deal with biological sequence files easily.
dependent packages 1total releases 20latest release January 18, 2023most recent commit 8 months agopypi fasta} Downloads
Henipipe ⭐ 6
Pipeline for CnR, CnT
total releases 82latest release December 28, 2022most recent commit 10 months ago
Demultiplex ⭐ 26
Versatile FASTA/FASTQ demultiplexer.
total releases 9latest release November 13, 2021most recent commit 7 months ago
Fastbio ⭐ 34
Deep learning library for biological sequences. Extension of Fastai and Pytorch.
total releases 8latest release July 30, 2021most recent commit 2 years ago
Orfipy ⭐ 25
Fast and flexible ORF finder
total releases 4latest release July 20, 2021most recent commit 2 years ago
Biohansel ⭐ 21
Rapidly subtype microbial genomes using single-nucleotide variant (SNV) subtyping schemes
total releases 19latest release March 05, 2021most recent commit 3 years ago
Fastaq ⭐ 45
Python3 scripts to manipulate FASTA and FASTQ files
dependent packages 7total releases 21latest release February 19, 2018most recent commit 2 years agopypi pyfastaq} Downloads
Categories
Privacy | About | Terms | Follow Us On Twitter

Downloads, Dependent Repos, Dependent Packages, Total Releases, Latest Releases data powered by Libraries.io.

Copyright 2018-2024 Awesome Open Source.  All rights reserved.