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The Top 23 Evolution Phylogenetics Open Source Projects

Open source projects categorized as Evolution Phylogenetics
Categories > Science > Evolution
Categories > Phylogenetics
Beast2 ⭐ 228
Bayesian Evolutionary Analysis by Sampling Trees
most recent commit 4 months ago
Beast Mcmc ⭐ 166
Bayesian Evolutionary Analysis Sampling Trees
most recent commit 5 months ago
Phyml ⭐ 156
PhyML -- Phylogenetic estimation using (Maximum) Likelihood
most recent commit 4 months ago
Cogent3 ⭐ 79
Comparative Genomics Toolkit 3
dependent packages 2total releases 18most recent commit 3 months agopypi cogent3} Downloads
Clipkit ⭐ 44
a multiple sequence alignment-trimming algorithm for accurate phylogenomic inference
total releases 34most recent commit 4 months ago
Phykit ⭐ 44
a UNIX shell toolkit for processing and analyzing multiple sequence alignments and phylogenies
total releases 50most recent commit 4 months ago
Archaeopteryx Js ⭐ 37
Archaeopteryx.js is a software tool for the visualization and analysis of highly annotated phylogenetic trees.
dependent packages 1total releases 3most recent commit 3 months agonpm archaeopteryx} Downloads
Favites ⭐ 35
FAVITES (FrAmework for VIral Transmission and Evolution Simulation)
most recent commit 5 months ago
Busco_phylogenomics ⭐ 26
BUSCO Phylogenomics | Utility script to construct species phylogenies using BUSCO proteins
most recent commit 6 months ago
Orthosnap ⭐ 16
a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees
total releases 6most recent commit 4 months ago
Bio Phylo ⭐ 15
Bio::Phylo - Phyloinformatic analysis using Perl
most recent commit 5 years ago
Plantphylomoji ⭐ 14
Dataset and scripts to create a Phylogeny of Plant Emojis
most recent commit 3 months ago
Cafeplotter ⭐ 13
A tool for plotting CAFE5 gene family expansion/contraction result
most recent commit 7 months ago
Datelife ⭐ 11
R package containing datelife's core functionality
total releases 6most recent commit 4 months ago
Whale.jl ⭐ 10
Bayesian gene tree reconciliation and WGD inference using amalgamated likelihood estimation
most recent commit 2 years ago
Trisicell ⭐ 9
Scalable tumor phylogeny inference and validation from single-cell RNA or DNA data
total releases 25most recent commit 4 months ago
Sensiphy ⭐ 8
R package to perform sensitivity analysis for comparative methods
total releases 7most recent commit 4 years ago
Course R Mol Data ⭐ 8
R is nowadays probably the most powerful tool for calculations of all kinds. There are plenty of modules available for work with molecular data. Those will be introduced during the course.
most recent commit 3 months ago
Treebase ⭐ 7
Source code for TreeBASE web application and database
most recent commit 2 years ago
Phylogenies.jl ⭐ 6
The BioJulia package for working with phylogenetic trees and geneologies.
most recent commit 6 years ago
Phyloxml Js ⭐ 6
phyloxml.js is a JavaScript program for reading (SAX style parser) and writing phylogenetic trees in phyloXML format.
dependent packages 3total releases 6most recent commit 2 years agonpm phyloxml} Downloads
Coelacanthevolution ⭐ 5
Analyses of coelacanth morphometrics, disparity, phylogeny, and rate of evolution
most recent commit 5 months ago
Scistreer ⭐ 5
R/Rcpp implementation of the ScisTree algorithm
total releases 2most recent commit 10 months ago
The 3 Most Depended On Evolution Phylogenetics Open Source Projects
Phyloxml Js ⭐ 6
phyloxml.js is a JavaScript program for reading (SAX style parser) and writing phylogenetic trees in phyloXML format.
dependent packages 3total releases 6latest release May 16, 2019most recent commit 2 years agonpm phyloxml} Downloads
Cogent3 ⭐ 79
Comparative Genomics Toolkit 3
dependent packages 2total releases 18latest release September 22, 2023most recent commit 3 months agopypi cogent3} Downloads
Archaeopteryx Js ⭐ 37
Archaeopteryx.js is a software tool for the visualization and analysis of highly annotated phylogenetic trees.
dependent packages 1total releases 3latest release May 16, 2019most recent commit 3 months agonpm archaeopteryx} Downloads
The 10 Latest Releases In Evolution Phylogenetics Open Source Projects
Orthosnap ⭐ 16
a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees
total releases 6latest release October 24, 2023most recent commit 4 months ago
Phykit ⭐ 44
a UNIX shell toolkit for processing and analyzing multiple sequence alignments and phylogenies
total releases 50latest release October 17, 2023most recent commit 4 months ago
Clipkit ⭐ 44
a multiple sequence alignment-trimming algorithm for accurate phylogenomic inference
total releases 34latest release October 02, 2023most recent commit 4 months ago
Cogent3 ⭐ 79
Comparative Genomics Toolkit 3
dependent packages 2total releases 18latest release September 22, 2023most recent commit 3 months agopypi cogent3} Downloads
Scphylo Tools ⭐ 5
a python toolkit for single-cell tumor phylogenetic analysis
total releases 5latest release July 26, 2023most recent commit 4 months ago
Trisicell ⭐ 9
Scalable tumor phylogeny inference and validation from single-cell RNA or DNA data
total releases 25latest release July 21, 2023most recent commit 4 months ago
Datelife ⭐ 11
R package containing datelife's core functionality
total releases 6latest release June 19, 2023most recent commit 4 months ago
Scistreer ⭐ 5
R/Rcpp implementation of the ScisTree algorithm
total releases 2latest release November 25, 2022most recent commit 10 months ago
Phyloxml Js ⭐ 6
phyloxml.js is a JavaScript program for reading (SAX style parser) and writing phylogenetic trees in phyloXML format.
dependent packages 3total releases 6latest release May 16, 2019most recent commit 2 years agonpm phyloxml} Downloads
Archaeopteryx Js ⭐ 37
Archaeopteryx.js is a software tool for the visualization and analysis of highly annotated phylogenetic trees.
dependent packages 1total releases 3latest release May 16, 2019most recent commit 3 months agonpm archaeopteryx} Downloads
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