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The Top 23 Electrophysiology Open Source Projects

Open source projects categorized as Electrophysiology
Categories > Electrophysiology
Eeglab ⭐ 511
EEGLAB is an open source signal processing environment for electrophysiological signals running on Matlab and developed at the SCCN/UCSD
most recent commit 3 months ago
Spikeinterface ⭐ 388
A Python-based module for creating flexible and robust spike sorting pipelines.
dependent packages 15total releases 42most recent commit 9 days agopypi spikeinterface} Downloads
Kilosort ⭐ 382
Fast spike sorting with drift correction for up to a thousand channels
total releases 1most recent commit 21 days ago
Brainstorm3 ⭐ 340
Brainstorm software: MEG, EEG, fNIRS, ECoG, sEEG and electrophysiology
most recent commit 3 months ago
Electrophysiologydata ⭐ 310
A list of openly available datasets in (mostly human) electrophysiology.
most recent commit a month ago
Fooof ⭐ 307
Parameterizing neural power spectra into periodic & aperiodic components.
dependent packages 5total releases 13most recent commit 6 months agopypi fooof} Downloads
Phy ⭐ 291
phy: interactive visualization and manual spike sorting of large-scale ephys data
dependent packages 2total releases 26most recent commit 6 months agopypi phy} Downloads
Bluepyopt ⭐ 190
Blue Brain Python Optimisation Library
dependent packages 7total releases 394most recent commit 3 months agopypi bluepyopt} Downloads
Elephant ⭐ 174
Elephant is the Electrophysiology Analysis Toolkit
dependent packages 14total releases 25most recent commit 3 months agopypi elephant} Downloads
Neurora ⭐ 130
A Python Toolbox for Multimode Neural Data Representation Analysis - A Representational Analysis Toolbox for Neuroscience, including Neural Pattern Similarity (NPS), Representational Similarity Analysis (RSA), Spatiotemporal Pattern Similarity (STPS) & Inter-Subject Correlation (ISC)
dependent packages 1total releases 150most recent commit a year agopypi neurora} Downloads
Chaste ⭐ 115
Chaste - Cancer Heart And Soft Tissue Environment - main public repository.
most recent commit 3 months ago
Spectral_connectivity ⭐ 109
Frequency domain estimation and functional and directed connectivity analysis tools for electrophysiological data
dependent packages 3total releases 16most recent commit 6 months agopypi spectral-connectivity} Downloads
Ecephys_spike_sorting ⭐ 93
Modules for processing extracellular electrophysiology data from Neuropixels probes
dependent packages 1total releases 2most recent commit 3 months agopypi forked-ecephys-spike-sorting} Downloads
Liblsl ⭐ 91
C++ lsl library for multi-modal time-synched data transmission over the local network
total releases 4most recent commit 5 months ago
Electrophysiologysoftware ⭐ 89
A list of openly available software tools for (mostly human) electrophysiology.
most recent commit a year ago
Neuropyxels ⭐ 87
NeuroPyxels (npyx) is a python library built for electrophysiologists using Neuropixels electrodes. This package stems from the need of a pythonist who really did not want to transition to MATLAB to work with Neuropixels: it features a suite of core utility functions for loading, processing and plotting Neuropixels data.
total releases 67most recent commit 3 months ago
Pyabf ⭐ 86
pyABF is a Python package for reading electrophysiology data from Axon Binary Format (ABF) files
dependent packages 7total releases 65most recent commit 8 months agopypi pyabf} Downloads
Cellexplorer ⭐ 81
CellExplorer is a graphical user interface, a standardized processing module and data structure for exploring and classifying single cells acquired using extracellular electrodes.
most recent commit 3 months ago
Hnn ⭐ 73
The Human Neocortical Neurosolver (HNN) is a software tool that gives researchers/clinicians the ability to develop/test hypotheses on circuit mechanisms underlying EEG/MEG data.
most recent commit 5 months ago
Efel ⭐ 60
Electrophys Feature Extraction Library
dependent packages 9total releases 321most recent commit 3 months agopypi efel} Downloads
Pysiology ⭐ 54
A Python package for physyological's signals processing
total releases 8most recent commit 5 months ago
Spyglass ⭐ 50
Neuroscience data analysis framework for reproducible research built by Loren Frank Lab at UCSF
total releases 11most recent commit 3 months ago
Oat ⭐ 48
Real-time position tracker for behavioral research
most recent commit 6 years ago
The 10 Most Depended On Electrophysiology Open Source Projects
Spikeinterface ⭐ 388
A Python-based module for creating flexible and robust spike sorting pipelines.
dependent packages 15total releases 42latest release November 13, 2023most recent commit 9 days agopypi spikeinterface} Downloads
Elephant ⭐ 174
Elephant is the Electrophysiology Analysis Toolkit
dependent packages 14total releases 25latest release November 10, 2023most recent commit 3 months agopypi elephant} Downloads
Efel ⭐ 60
Electrophys Feature Extraction Library
dependent packages 9total releases 321latest release November 22, 2023most recent commit 3 months agopypi efel} Downloads
Pyabf ⭐ 86
pyABF is a Python package for reading electrophysiology data from Axon Binary Format (ABF) files
dependent packages 7total releases 65latest release August 02, 2023most recent commit 8 months agopypi pyabf} Downloads
Bluepyopt ⭐ 190
Blue Brain Python Optimisation Library
dependent packages 7total releases 394latest release October 23, 2023most recent commit 3 months agopypi bluepyopt} Downloads
Mtscomp ⭐ 17
Multichannel time series lossless compression in pure Python based on NumPy and zlib
dependent packages 6total releases 5latest release May 11, 2021most recent commit 2 years agopypi mtscomp} Downloads
Fooof ⭐ 307
Parameterizing neural power spectra into periodic & aperiodic components.
dependent packages 5total releases 13latest release September 20, 2023most recent commit 6 months agopypi fooof} Downloads
Hs2 ⭐ 24
Software for high density electrophysiology
dependent packages 4total releases 10latest release June 26, 2022most recent commit 10 months agopypi herdingspikes} Downloads
Spectral_connectivity ⭐ 109
Frequency domain estimation and functional and directed connectivity analysis tools for electrophysiological data
dependent packages 3total releases 16latest release July 19, 2023most recent commit 6 months agopypi spectral-connectivity} Downloads
Phy ⭐ 291
phy: interactive visualization and manual spike sorting of large-scale ephys data
dependent packages 2total releases 26latest release September 07, 2021most recent commit 6 months agopypi phy} Downloads
The 10 Latest Releases In Electrophysiology Open Source Projects
Cleo ⭐ 7
Closed-Loop, Electrophysiology, and Optophysiology experiment simulation testbed for mesoscale neuroscience
total releases 16latest release December 06, 2023most recent commit 4 months ago
Sanpy ⭐ 11
SanPy is software for whole-cell current clamp analysis.
total releases 7latest release November 27, 2023most recent commit 3 months ago
Efel ⭐ 60
Electrophys Feature Extraction Library
dependent packages 9total releases 321latest release November 22, 2023most recent commit 3 months agopypi efel} Downloads
Spikeinterface ⭐ 388
A Python-based module for creating flexible and robust spike sorting pipelines.
dependent packages 15total releases 42latest release November 13, 2023most recent commit 9 days agopypi spikeinterface} Downloads
Elephant ⭐ 174
Elephant is the Electrophysiology Analysis Toolkit
dependent packages 14total releases 25latest release November 10, 2023most recent commit 3 months agopypi elephant} Downloads
Spyglass ⭐ 50
Neuroscience data analysis framework for reproducible research built by Loren Frank Lab at UCSF
total releases 11latest release October 23, 2023most recent commit 3 months ago
Bluepyopt ⭐ 190
Blue Brain Python Optimisation Library
dependent packages 7total releases 394latest release October 23, 2023most recent commit 3 months agopypi bluepyopt} Downloads
Fooof ⭐ 307
Parameterizing neural power spectra into periodic & aperiodic components.
dependent packages 5total releases 13latest release September 20, 2023most recent commit 6 months agopypi fooof} Downloads
Spikewrap ⭐ 8
total releases 1latest release August 03, 2023most recent commit 3 months ago
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