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The Top 23 Docker Reproducible Research Open Source Projects

Open source projects categorized as Docker Reproducible Research
Categories > Virtualization > Docker
Categories > Science > Reproducible Research
Nextflow ⭐ 2,447
A DSL for data-driven computational pipelines
dependent packages 16total releases 250most recent commit 3 months ago
Evalai ⭐ 1,621
☁️ 🚀 📊 📈 Evaluating state of the art in AI
most recent commit 3 months ago
Gpu Jupyter ⭐ 618
GPU-Jupyter: Leverage the flexibility of Jupyterlab through the power of your NVIDIA GPU to run your code from Tensorflow and Pytorch in collaborative notebooks on the GPU.
most recent commit 3 months ago
Neurodocker ⭐ 317
Generate custom Docker and Singularity images, and minimize existing containers
dependent packages 4total releases 15most recent commit 20 days agopypi neurodocker} Downloads
Reprozip ⭐ 286
ReproZip is a tool that simplifies the process of creating reproducible experiments from command-line executions, a frequently-used common denominator in computational science.
dependent packages 6total releases 32most recent commit 5 months agopypi reprounzip} Downloads
Containerit ⭐ 285
Package an R workspace and all dependencies as a Docker container
most recent commit 2 years ago
Liftr ⭐ 160
🐳 Containerize R Markdown documents for continuous reproducibility
most recent commit 2 years ago
Grand Challenge.org ⭐ 156
A platform for end-to-end development of machine learning solutions in biomedical imaging
most recent commit 3 months ago
Sarek ⭐ 126
Detect germline or somatic variants from normal or tumour/normal whole-genome or targeted sequencing
most recent commit 4 years ago
Everware ⭐ 111
Everware is about re-useable science, it allows people to jump right in to your research code.
most recent commit 6 years ago
Bacannot ⭐ 85
Generic but comprehensive pipeline for prokaryotic genome annotation and interrogation with interactive reports and shiny app.
most recent commit 5 months ago
Emp ⭐ 44
🔬 Empirical CLI
dependent packages 2total releases 14most recent commit 4 years agonpm empirical-cli} Downloads
Repro ⭐ 33
Repro is a library for easily running code from published papers via Docker.
dependent packages 1total releases 10most recent commit 2 years agopypi repro} Downloads
Appian ⭐ 32
APPIAN is an open-source automated software pipeline for analyzing PET images in conjunction with MRI. The goal of APPIAN is to make PET tracer kinetic data analysis easy for users with moderate computing skills and to facilitate reproducible research.
most recent commit a year ago
Enos ⭐ 30
Experimental eNvironment for OpenStack 🐒
total releases 43most recent commit a year ago
Ck Docker ⭐ 30
Collective Knowledge extension to automate Docker "build","run" and "push" functions and packge CK repositories for collaborative and reproducible research:
most recent commit 3 years ago
Dstudio ⭐ 29
most recent commit 5 months ago
Binderhub Deploy ⭐ 27
Deploy a BinderHub from scratch on Microsoft Azure
most recent commit a year ago
Ukbrest ⭐ 27
ukbREST: efficient and streamlined data access for reproducible research of large biobanks
most recent commit 3 years ago
Researchcompendium ⭐ 24
NOTE: This repo is archived. Please see https://github.com/benmarwick/rrtools for my current approach
most recent commit 7 years ago
Kogia ⭐ 22
Docker containers for bioinformatics with a small footprint
most recent commit 8 months ago
Galaksio ⭐ 17
An easy-to-use way for running Galaxy workflows.
most recent commit 4 years ago
Binderhub Deploy Gke ⭐ 11
Automatically deploy a BinderHub to Google Cloud!
most recent commit a year ago
The 5 Most Depended On Docker Reproducible Research Open Source Projects
Nextflow ⭐ 2,447
A DSL for data-driven computational pipelines
dependent packages 16total releases 250latest release November 24, 2023most recent commit 3 months ago
Neurodocker ⭐ 317
Generate custom Docker and Singularity images, and minimize existing containers
dependent packages 4total releases 15latest release March 07, 2022most recent commit 20 days agopypi neurodocker} Downloads
Emp ⭐ 44
:microscope: Empirical CLI
dependent packages 2total releases 14latest release July 15, 2017most recent commit 4 years agonpm empirical-cli} Downloads
Repro ⭐ 33
Repro is a library for easily running code from published papers via Docker.
dependent packages 1total releases 10latest release August 01, 2022most recent commit 2 years agopypi repro} Downloads
The 7 Latest Releases In Docker Reproducible Research Open Source Projects
Nextflow ⭐ 2,447
A DSL for data-driven computational pipelines
dependent packages 16total releases 250latest release November 24, 2023most recent commit 3 months ago
Repro ⭐ 33
Repro is a library for easily running code from published papers via Docker.
dependent packages 1total releases 10latest release August 01, 2022most recent commit 2 years agopypi repro} Downloads
Neurodocker ⭐ 317
Generate custom Docker and Singularity images, and minimize existing containers
dependent packages 4total releases 15latest release March 07, 2022most recent commit 20 days agopypi neurodocker} Downloads
Nbreproduce ⭐ 11
Reproduce Jupyter Notebooks inside Docker Containers.
total releases 5latest release October 18, 2020most recent commit a year ago
Enos ⭐ 30
Experimental eNvironment for OpenStack :monkey:
total releases 43latest release August 06, 2018most recent commit a year ago
Emp ⭐ 44
:microscope: Empirical CLI
dependent packages 2total releases 14latest release July 15, 2017most recent commit 4 years agonpm empirical-cli} Downloads
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