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The Top 23 Docker Nextflow Open Source Projects

Open source projects categorized as Docker Nextflow
Categories > Virtualization > Docker
Categories > Nextflow
Nextflow ⭐ 2,447
A DSL for data-driven computational pipelines
dependent packages 16total releases 250most recent commit 3 months ago
Sarek ⭐ 126
Detect germline or somatic variants from normal or tumour/normal whole-genome or targeted sequencing
most recent commit 4 years ago
Dockstore ⭐ 113
Our VM/Docker sharing infrastructure and management component
most recent commit 3 months ago
Bacannot ⭐ 85
Generic but comprehensive pipeline for prokaryotic genome annotation and interrogation with interactive reports and shiny app.
most recent commit 5 months ago
Master_of_pores ⭐ 77
Nextflow pipeline for analysis of direct RNA Nanopore reads
most recent commit a year ago
Nanoclust ⭐ 59
NanoCLUST is an analysis pipeline for UMAP-based classification of amplicon-based full-length 16S rRNA nanopore reads
most recent commit a year ago
Yamp ⭐ 52
YAMP: Yet Another Metagenomic Pipeline
most recent commit 10 months ago
Needlestack ⭐ 39
Multi-sample somatic variant caller
most recent commit 4 years ago
Nf Hack17 Tutorial ⭐ 31
Nextflow basic tutorial for newbie users
most recent commit 6 years ago
Rnatoy ⭐ 24
A proof of concept RNA-Seq pipeline with Nextflow
most recent commit 4 years ago
Wave ⭐ 23
On-demand containers provisioning service
most recent commit 3 months ago
Mop2 ⭐ 20
Master of Pores 2
most recent commit 5 months ago
Porefile ⭐ 19
A Nextflow full-length 16S profiling pipeline for ONT reads
most recent commit 5 months ago
Maliampi ⭐ 19
Maximum Likelihood Amplicon Pipeline
total releases 1most recent commit 7 months ago
Spew ⭐ 19
Automatic Packaging and Distribution of Bioinformatics Pipelines
most recent commit 7 years ago
Cookiecutter ⭐ 18
DEPRECIATED! Please use nf-core/tools instead
most recent commit 6 years ago
Gatk4_best_practice ⭐ 18
GATK4 Best Practice Nextflow Pipeline
most recent commit 6 years ago
Crg Course Nov16 ⭐ 17
Nextflow + Docker tutorial material
most recent commit 6 years ago
Docker Benchmarks ⭐ 17
A benchmarks of genomic pipelines running in Docker containers
most recent commit 9 years ago
Wave Showcase ⭐ 16
Examples showing how to configure Nextflow to run with Wave containers provisioning service
most recent commit 6 months ago
Grandeur ⭐ 13
UPHL's Reference Free Pipeline
most recent commit 4 months ago
Tostadas ⭐ 10
🧬 💻 TOSTADAS → Toolkit for Open Sequence Triage, Annotation and DAtabase Submission
most recent commit 4 months ago
Nf Whisper ⭐ 9
Proof-of-concept Nextflow pipeline to interact with OpenAI Whisper
most recent commit 7 months ago
The 2 Latest Releases In Docker Nextflow Open Source Projects
Nextflow ⭐ 2,447
A DSL for data-driven computational pipelines
dependent packages 16total releases 250latest release November 24, 2023most recent commit 3 months ago
Maliampi ⭐ 19
Maximum Likelihood Amplicon Pipeline
total releases 1latest release April 19, 2019most recent commit 7 months ago
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