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The Top 23 Docker Genome Open Source Projects

Open source projects categorized as Docker Genome
Categories > Virtualization > Docker
Categories > Science > Genome
Funannotate ⭐ 261
Eukaryotic Genome Annotation Pipeline
total releases 13most recent commit 5 months ago
Ngmlr ⭐ 230
NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on reads that span structural variations
most recent commit 3 years ago
Ngb ⭐ 151
New Genome Browser (NGB) - a Web - based NGS data viewer with unique Structural Variations (SVs) visualization capabilities, high performance, scalability, and cloud data support
most recent commit 3 months ago
Blobtools ⭐ 136
Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets
most recent commit 2 years ago
Ampliconarchitect ⭐ 119
AmpliconArchitect (AA) is a tool to identify one or more connected genomic regions which have simultaneous copy number amplification and elucidates the architecture of the amplicon. In the current version, AA takes as input next generation sequencing reads (paired-end Illumina reads) mapped to the hg19/GRCh37 reference sequence and one or more regions of interest. Please "watch" this repository for improvements in runtime, accuracy and annotations for GRCh38 human reference genome coming up so
most recent commit 6 months ago
Instrain ⭐ 104
Bioinformatics program inStrain
total releases 59most recent commit 8 months ago
Peregrine ⭐ 94
Peregrine: Fast Genome Assembler Using SHIMMER Index
most recent commit 2 years ago
Bacannot ⭐ 85
Generic but comprehensive pipeline for prokaryotic genome annotation and interrogation with interactive reports and shiny app.
most recent commit 5 months ago
Ngseasy ⭐ 76
Dockerised Next Generation Sequencing Pipeline (QC, Align, Calling, Annotation)
most recent commit 7 years ago
Mitobim ⭐ 74
MITObim - mitochondrial baiting and iterative mapping
most recent commit 6 years ago
Uta ⭐ 59
Universal Transcript Archive: comprehensive genome-transcript alignments; multiple transcript sources, versions, and alignment methods; available as a docker image
most recent commit 3 months ago
Asap ⭐ 46
A scalable bacterial genome assembly, annotation and analysis pipeline
most recent commit 2 years ago
Ngs Primerplex ⭐ 42
NGS-PrimerPlex is a high-throughput tool for mupltiplex primer design
total releases 1most recent commit 9 months ago
Metapalette ⭐ 41
Metagenomic profiling and phylogenetic distances via common kmers
most recent commit 3 years ago
Gcv ⭐ 32
Federating genomes with love (and synteny derived from functional annotations)
most recent commit 5 months ago
Fegenie ⭐ 29
HMM-based identification and categorization of iron genes and iron gene operons in genomes and metagenomes
most recent commit 2 years ago
Cobrame ⭐ 29
A COBRApy extension for genome-scale models of metabolism and expression (ME-models)
most recent commit 5 years ago
Geniesys ⭐ 26
Genome Integrative Explorer System (GenIE-Sys)
most recent commit 3 years ago
Cgppindel ⭐ 25
Cancer Genome Project Insertion/Deletion detection pipeline based around Pindel
most recent commit a year ago
Chilin ⭐ 24
ChIP-seq DC and QC Pipeline
most recent commit 3 years ago
Crisprdisco ⭐ 21
CRISPR discovery pipeline
most recent commit 5 years ago
Primerdesign ⭐ 20
A tool to design highly specific PCR primers for the validation of genomic alterations including structural variants
most recent commit 7 years ago
Cvtree ⭐ 19
A whole-genome and alignment-free prokaryotic phylogeny tool
most recent commit 4 months ago
The 5 Latest Releases In Docker Genome Open Source Projects
Genomehubs ⭐ 12
Search and explore genomic metadata, Earth BioGenome Project progress and assembly features
total releases 128latest release November 09, 2023most recent commit 4 months ago
Instrain ⭐ 104
Bioinformatics program inStrain
total releases 59latest release August 25, 2023most recent commit 8 months ago
Funannotate ⭐ 261
Eukaryotic Genome Annotation Pipeline
total releases 13latest release August 10, 2022most recent commit 5 months ago
Toil Vg ⭐ 9
Distributed and cloud computing framework for vg
total releases 415latest release September 23, 2021most recent commit 3 years ago
Ngs Primerplex ⭐ 42
NGS-PrimerPlex is a high-throughput tool for mupltiplex primer design
total releases 1latest release December 20, 2019most recent commit 9 months ago
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