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The Top 23 R Dna Open Source Projects

Open source projects categorized as R Dna
Ngsplot ⭐ 231
Quick mining and visualization of NGS data by integrating genomic databases
most recent commit a year ago
Genomics ⭐ 154
A collection of scripts and notes related to genomics and bioinformatics
most recent commit 2 years ago
Copykat ⭐ 117
most recent commit 2 years ago
Ichorcna ⭐ 73
Estimating tumor fraction in cell-free DNA from ultra-low-pass whole genome sequencing.
most recent commit 4 years ago
Biobabble ⭐ 55
公众号：biobabble
most recent commit 3 years ago
Sesame ⭐ 43
🍪 SEnsible Step-wise Analysis of DNA MEthylation BeadChips
most recent commit 3 months ago
Nanodisco ⭐ 37
nanodisco: a toolbox for discovering and exploiting multiple types of DNA methylation from individual bacteria and microbiomes using nanopore sequencing.
most recent commit 2 years ago
Mapdamage ⭐ 37
mapDamage: tracking and quantifying damage patterns in ancient DNA sequences
total releases 1most recent commit 7 months ago
Bioanalyzer ⭐ 36
R tools for Agilent electrophoresis data
most recent commit 9 months ago
Dna_pandas_selenium ⭐ 33
Webscraping and data analysis of DNA with pandas and Selenium
most recent commit 5 years ago
Qdnaseq ⭐ 33
QDNAseq package for Bioconductor
most recent commit a year ago
Tailfindr ⭐ 32
An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.
most recent commit a year ago
Ltrpred ⭐ 31
De novo annotation of young retrotransposons
most recent commit 2 years ago
Candis ⭐ 27
🎀 A data mining suite for gene expression data.
most recent commit 4 years ago
Clonealign ⭐ 25
Bayesian inference of clone-specific gene expression estimates by integrating single-cell RNA-seq and single-cell DNA-seq data
most recent commit 3 years ago
Phylotar ⭐ 24
An automated pipeline for retrieving orthologous DNA sequences from GenBank in R
total releases 1most recent commit 10 months ago
Restez ⭐ 24
😴 📂 Create and Query a Local Copy of GenBank in R
total releases 4most recent commit 6 months ago
Methrix ⭐ 22
An R 📦 for fast and flexible DNA methylation analysis
most recent commit 7 months ago
Coala ⭐ 21
A Framework for Coalescent Simulation in R
dependent packages 2total releases 14most recent commit a year ago
Ewastools ⭐ 21
A collection of functions for working with DNA methylation microarrays (quality control, pre-processing, LC estimation, ...)
most recent commit a year ago
Rtfbs_db ⭐ 21
Parse TF motifs from public databases, read into R, and scan using 'rtfbs'.
most recent commit 5 years ago
Scnmt_gastrulation ⭐ 20
scNMT-seq gastrulation
most recent commit 4 years ago
Methylcc ⭐ 20
R/BioC package to estimate the cell composition of whole blood in DNA methylation samples in microarray or sequencing platforms
most recent commit a year ago
The 3 Most Depended On R Dna Open Source Projects
Jointseg ⭐ 5
dependent packages 2total releases 3latest release January 11, 2019most recent commit 5 years ago
Coala ⭐ 21
A Framework for Coalescent Simulation in R
dependent packages 2total releases 14latest release January 05, 2023most recent commit a year ago
Apex ⭐ 5
Phylogenetic Methods for Multiple Gene Data
dependent packages 1total releases 5latest release April 11, 2020most recent commit 7 months ago
The 8 Latest Releases In R Dna Open Source Projects
Restez ⭐ 24
:sleeping: :open_file_folder: Create and Query a Local Copy of GenBank in R
total releases 4latest release October 25, 2023most recent commit 6 months ago
Crisprdesignr ⭐ 10
Software used to design guide RNA sequences for CRISPR/Cas9 genome editing
total releases 3latest release April 12, 2023most recent commit a year ago
Coala ⭐ 21
A Framework for Coalescent Simulation in R
dependent packages 2total releases 14latest release January 05, 2023most recent commit a year ago
Mapdamage ⭐ 37
mapDamage: tracking and quantifying damage patterns in ancient DNA sequences
total releases 1latest release June 18, 2021most recent commit 7 months ago
Apex ⭐ 5
Phylogenetic Methods for Multiple Gene Data
dependent packages 1total releases 5latest release April 11, 2020most recent commit 7 months ago
Ctdnatools ⭐ 17
R package to work with ctDNA sequencing data
total releases 1latest release March 04, 2020most recent commit 2 years ago
Jointseg ⭐ 5
dependent packages 2total releases 3latest release January 11, 2019most recent commit 5 years ago
Phylotar ⭐ 24
An automated pipeline for retrieving orthologous DNA sequences from GenBank in R
total releases 1latest release July 31, 2018most recent commit 10 months ago
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