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The Top 23 Python Dna Open Source Projects

Open source projects categorized as Python Dna
Biopython ⭐ 3,918
Official git repository for Biopython (originally converted from CVS)
dependent packages 1,373total releases 58most recent commit 3 months agopypi biopython} Downloads
Deepvariant ⭐ 2,978
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
most recent commit 4 months ago
Galaxy ⭐ 1,211
Data intensive science for everyone.
dependent packages 23total releases 30most recent commit 3 months agopypi galaxy-util} Downloads
Khmer ⭐ 729
In-memory nucleotide sequence k-mer counting, filtering, graph traversal and more
dependent packages 7total releases 18most recent commit 2 years agopypi khmer} Downloads
Netprog_basics ⭐ 682
Code, Examples, and Resources for the Network Programmability Basics Video Course
most recent commit a year ago
Chip Seq Analysis ⭐ 586
ChIP-seq analysis notes from Ming Tang
most recent commit 2 years ago
Dnafeaturesviewer ⭐ 500
👁️ Python library to plot DNA sequence features (e.g. from Genbank files)
dependent packages 22total releases 30most recent commit 6 months agopypi dna-features-viewer} Downloads
Pyfaidx ⭐ 427
Efficient pythonic random access to fasta subsequences
dependent packages 119total releases 86most recent commit 3 months agopypi pyfaidx} Downloads
Nucleotide Transformer ⭐ 305
🧬 Nucleotide Transformer: Building and Evaluating Robust Foundation Models for Human Genomics
most recent commit 3 months ago
Whatshap ⭐ 290
Read-based phasing of genomic variants, also called haplotype assembly
dependent packages 2total releases 23most recent commit 3 months agopypi whatshap} Downloads
Prolif ⭐ 286
Interaction Fingerprints for protein-ligand complexes and more
dependent packages 2total releases 20most recent commit 6 months agopypi prolif} Downloads
Dnaplotlib ⭐ 238
DNA plotting library for Python
dependent packages 1total releases 1most recent commit 3 years agopypi dnaplotlib} Downloads
Lightdock ⭐ 234
Protein-protein, protein-peptide and protein-DNA docking framework based on the GSO algorithm
most recent commit 3 months ago
Pycoqc ⭐ 213
pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies basecaller (Albacore/Guppy)
total releases 50most recent commit 5 months ago
Pyfastx ⭐ 211
a python package for fast random access to sequences from plain and gzipped FASTA/Q files
dependent packages 20total releases 68most recent commit 5 months agopypi pyfastx} Downloads
Nanoengineer ⭐ 210
open-source nanotech CAD
most recent commit 10 years ago
Dnachisel ⭐ 168
✏️ A versatile DNA sequence optimizer
dependent packages 7total releases 40most recent commit 10 months agopypi dnachisel} Downloads
Dne Dna Code ⭐ 146
Provides code examples for DevNet Test Drive Catalyst (DNA) series
most recent commit 9 months ago
Pydna ⭐ 140
Clone with Python! Data structures for double stranded DNA & simulation of homologous recombination, Gibson assembly, cut & paste cloning.
dependent packages 7total releases 110most recent commit 4 months agopypi pydna} Downloads
Dna Seq Gatk Variant Calling ⭐ 138
This Snakemake pipeline implements the GATK best-practices workflow
most recent commit 3 years ago
Chiron ⭐ 114
A basecaller for Oxford Nanopore Technologies' sequencers
total releases 24most recent commit a year ago
Lineage ⭐ 114
tools for genetic genealogy and the analysis of consumer DNA test results
total releases 38most recent commit a year ago
Ingan ⭐ 111
Official code for the paper "InGAN: Capturing and Retargeting the DNA of a Natural Image"
most recent commit 4 years ago
The 10 Most Depended On Python Dna Open Source Projects
Biopython ⭐ 3,918
Official git repository for Biopython (originally converted from CVS)
dependent packages 1,373total releases 58latest release February 13, 2023most recent commit 3 months agopypi biopython} Downloads
Pyfaidx ⭐ 427
Efficient pythonic random access to fasta subsequences
dependent packages 119total releases 86latest release September 22, 2023most recent commit 3 months agopypi pyfaidx} Downloads
Galaxy ⭐ 1,211
Data intensive science for everyone.
dependent packages 23total releases 30latest release December 08, 2023most recent commit 3 months agopypi galaxy-util} Downloads
Dnafeaturesviewer ⭐ 500
:eye: Python library to plot DNA sequence features (e.g. from Genbank files)
dependent packages 22total releases 30latest release November 01, 2023most recent commit 6 months agopypi dna-features-viewer} Downloads
Pyfastx ⭐ 211
a python package for fast random access to sequences from plain and gzipped FASTA/Q files
dependent packages 20total releases 68latest release November 25, 2023most recent commit 5 months agopypi pyfastx} Downloads
Dnachisel ⭐ 168
:pencil2: A versatile DNA sequence optimizer
dependent packages 7total releases 40latest release May 05, 2022most recent commit 10 months agopypi dnachisel} Downloads
Khmer ⭐ 729
In-memory nucleotide sequence k-mer counting, filtering, graph traversal and more
dependent packages 7total releases 18latest release December 15, 2021most recent commit 2 years agopypi khmer} Downloads
Kipoiseq ⭐ 58
Standard set of data-loaders for training and making predictions for DNA sequence-based models.
dependent packages 6total releases 21latest release October 27, 2021most recent commit 2 years agopypi kipoiseq} Downloads
Seqfold ⭐ 66
nucleic acid folding
dependent packages 4total releases 29latest release March 27, 2022most recent commit 9 months agopypi seqfold} Downloads
The 10 Latest Releases In Python Dna Open Source Projects
Galaxy ⭐ 1,211
Data intensive science for everyone.
dependent packages 23total releases 30latest release December 08, 2023most recent commit 3 months agopypi galaxy-util} Downloads
Algebra ⭐ 10
A Boolean Algebra for Genetic Variants
dependent packages 2total releases 18latest release December 04, 2023most recent commit 3 months agopypi mutalyzer-algebra} Downloads
Pyfastx ⭐ 211
a python package for fast random access to sequences from plain and gzipped FASTA/Q files
dependent packages 20total releases 68latest release November 25, 2023most recent commit 5 months agopypi pyfastx} Downloads
Dnacentersdk ⭐ 61
Cisco DNA Center Python SDK
dependent packages 3total releases 52latest release November 14, 2023most recent commit 3 months agopypi dnacentersdk} Downloads
Dnafeaturesviewer ⭐ 500
:eye: Python library to plot DNA sequence features (e.g. from Genbank files)
dependent packages 22total releases 30latest release November 01, 2023most recent commit 6 months agopypi dna-features-viewer} Downloads
Cadnano2 ⭐ 35
Cadnano2
total releases 12latest release October 28, 2023most recent commit 5 months ago
Open3spn2 ⭐ 16
An implementation of the 3SPN2 and 3SPN2.C coarse-grained DNA forcefields in OpenMM
total releases 7latest release October 24, 2023most recent commit 4 months ago
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