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The Top 23 Pipeline Dna Open Source Projects

Open source projects categorized as Pipeline Dna
Categories > Science > Dna
Categories > Data Processing > Pipeline
Galaxy ⭐ 1,211
Data intensive science for everyone.
dependent packages 23total releases 30most recent commit 3 months agopypi galaxy-util} Downloads
Ugene ⭐ 190
UGENE is free open-source cross-platform bioinformatics software
most recent commit 3 months ago
3d Dna ⭐ 176
3D de novo assembly (3D DNA) pipeline
most recent commit 5 months ago
Dna Seq Gatk Variant Calling ⭐ 138
This Snakemake pipeline implements the GATK best-practices workflow
most recent commit 3 years ago
Eager ⭐ 112
A fully reproducible and state-of-the-art ancient DNA analysis pipeline
most recent commit 3 months ago
Animationdna ⭐ 75
Maya > Arnold > Nuke pipeline
most recent commit 4 years ago
Methpipe ⭐ 63
A pipeline for analyzing DNA methylation data from bisulfite sequencing.
most recent commit 2 years ago
Deepvariant ⭐ 38
Google's DeepVariant variant caller as a Nextflow pipeline
most recent commit 3 years ago
Hlatyping ⭐ 34
Precision HLA typing from next-generation sequencing data
most recent commit 2 years ago
Ltrpred ⭐ 31
De novo annotation of young retrotransposons
most recent commit 2 years ago
Nanostream Dataflow ⭐ 25
real-time stream processing of DNA nanopore sequencer reads with dataflow
most recent commit 4 years ago
Phylotar ⭐ 24
An automated pipeline for retrieving orthologous DNA sequences from GenBank in R
total releases 1most recent commit 10 months ago
Germline Dna ⭐ 23
A BioWDL variantcalling pipeline for germline DNA data. Starting with FASTQ files to produce VCF files. Category:Multi-Sample
most recent commit a year ago
Gembs ⭐ 23
gemBS is a bioinformatics pipeline designed for high throughput analysis of DNA methylation from Whole Genome Bisulfite Sequencing data (WGBS).
most recent commit 3 years ago
Amrplusplus_v2 ⭐ 21
MEGARes and AmrPlusPlus - A comprehensive database of antimicrobial resistance genes and user-friendly pipeline for analysis of high-throughput sequencing data
most recent commit a year ago
Circdna ⭐ 18
Pipeline for the identification of extrachromosomal circular DNA (ecDNA) from Circle-seq, WGS, and ATAC-seq data that were generated from cancer and other eukaryotic cells.
most recent commit 3 months ago
Halvade ⭐ 15
Parallel read alignment and variant calling using MapReduce
most recent commit 5 years ago
Personal Identification Pipeline ⭐ 12
most recent commit 7 years ago
Actk ⭐ 11
Automated Cell Toolkit
total releases 6most recent commit 3 years ago
Deepvariant On Spark ⭐ 11
DeepVariant-on-Spark is a germline short variant calling pipeline that runs Google DeepVariant on Apache Spark at scale.
most recent commit 2 years ago
Iap ⭐ 11
Illumina analysis pipeline
most recent commit 4 years ago
Metabar ⭐ 9
metabaR is an R package to curate and visualise DNA metabarcoding data after basic bioinformatics analyses.
most recent commit a year ago
Metabeat ⭐ 9
Metabarcoding analyses pipeline - metaBarcoding and Environmental DNA Analysis Tool
most recent commit 5 years ago
The 3 Latest Releases In Pipeline Dna Open Source Projects
Galaxy ⭐ 1,211
Data intensive science for everyone.
dependent packages 23total releases 30latest release December 08, 2023most recent commit 3 months agopypi galaxy-util} Downloads
Actk ⭐ 11
Automated Cell Toolkit
total releases 6latest release December 15, 2020most recent commit 3 years ago
Phylotar ⭐ 24
An automated pipeline for retrieving orthologous DNA sequences from GenBank in R
total releases 1latest release July 31, 2018most recent commit 10 months ago
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