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The Top 13 Sequencing Dna Ngs Open Source Projects

Open source projects categorized as Sequencing Dna Ngs
Categories > Science > Dna
Categories > Science > Ngs
Categories > Science > Sequencing
Deepvariant ⭐ 2,978
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
most recent commit 4 months ago
Gatk ⭐ 1,576
Official code repository for GATK versions 4 and up
dependent packages 2total releases 46most recent commit a month ago
Galaxy ⭐ 1,211
Data intensive science for everyone.
dependent packages 23total releases 30most recent commit 3 months agopypi galaxy-util} Downloads
Htsjdk ⭐ 271
A Java API for high-throughput sequencing data (HTS) formats.
dependent packages 87total releases 78most recent commit 4 months ago
Ugene ⭐ 190
UGENE is free open-source cross-platform bioinformatics software
most recent commit 3 months ago
Catch ⭐ 63
A package for designing compact and comprehensive capture probe sets.
most recent commit 6 months ago
Mapdamage ⭐ 37
mapDamage: tracking and quantifying damage patterns in ancient DNA sequences
total releases 1most recent commit 7 months ago
Hpg Aligner ⭐ 32
HPG Aligner is an ultrafast and highly sensitive Next-Generation Sequencing (NGS) mapper which supoprts both DNA and RNA alignment
most recent commit 7 years ago
Pathos ⭐ 22
PathOS is a clinical application for filtering, analysing and reporting on NGS variants
most recent commit 3 years ago
Ctdnatools ⭐ 17
R package to work with ctDNA sequencing data
total releases 1most recent commit 2 years ago
Ngs_dna ⭐ 13
NGS DNA best practice pipeline for Illumina sequencing - alignment, variant calling, annotation and QC
most recent commit 3 months ago
Deepvariant On Spark ⭐ 11
DeepVariant-on-Spark is a germline short variant calling pipeline that runs Google DeepVariant on Apache Spark at scale.
most recent commit 2 years ago
Fonda ⭐ 7
Fonda is a framework which offers scalable and automatic analysis of multiple NGS sequencing data types
most recent commit 2 years ago
The 3 Most Depended On Sequencing Dna Ngs Open Source Projects
Htsjdk ⭐ 271
A Java API for high-throughput sequencing data (HTS) formats.
dependent packages 87total releases 78latest release October 13, 2023most recent commit 4 months ago
Galaxy ⭐ 1,211
Data intensive science for everyone.
dependent packages 23total releases 30latest release December 08, 2023most recent commit 3 months agopypi galaxy-util} Downloads
Gatk ⭐ 1,576
Official code repository for GATK versions 4 and up
dependent packages 2total releases 46latest release March 16, 2023most recent commit a month ago
The 5 Latest Releases In Sequencing Dna Ngs Open Source Projects
Galaxy ⭐ 1,211
Data intensive science for everyone.
dependent packages 23total releases 30latest release December 08, 2023most recent commit 3 months agopypi galaxy-util} Downloads
Htsjdk ⭐ 271
A Java API for high-throughput sequencing data (HTS) formats.
dependent packages 87total releases 78latest release October 13, 2023most recent commit 4 months ago
Gatk ⭐ 1,576
Official code repository for GATK versions 4 and up
dependent packages 2total releases 46latest release March 16, 2023most recent commit a month ago
Mapdamage ⭐ 37
mapDamage: tracking and quantifying damage patterns in ancient DNA sequences
total releases 1latest release June 18, 2021most recent commit 7 months ago
Ctdnatools ⭐ 17
R package to work with ctDNA sequencing data
total releases 1latest release March 04, 2020most recent commit 2 years ago
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