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The Top 23 Genome Dna Open Source Projects

Open source projects categorized as Genome Dna
Categories > Science > Dna
Categories > Science > Genome
Deepvariant ⭐ 2,978
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
most recent commit 4 months ago
Gatk ⭐ 1,576
Official code repository for GATK versions 4 and up
dependent packages 2total releases 46most recent commit a month ago
Vg ⭐ 1,022
tools for working with genome variation graphs
most recent commit 3 months ago
Dna2json ⭐ 357
Formats your genome file as JSON
dependent packages 4total releases 14most recent commit 7 years agonpm dna2json} Downloads
Bismark ⭐ 335
A tool to map bisulfite converted sequence reads and determine cytosine methylation states
most recent commit 7 months ago
Ngsplot ⭐ 231
Quick mining and visualization of NGS data by integrating genomic databases
most recent commit a year ago
Pyfastx ⭐ 211
a python package for fast random access to sequences from plain and gzipped FASTA/Q files
dependent packages 20total releases 68most recent commit 5 months agopypi pyfastx} Downloads
Basset ⭐ 195
Convolutional neural network analysis for predicting DNA sequence activity.
most recent commit 4 years ago
Aligngraph ⭐ 165
Algorithm for secondary de novo genome assembly guided by closely related references
most recent commit 4 years ago
Dna Seq Analysis ⭐ 128
DNA sequencing analysis notes from Ming Tang
most recent commit a year ago
Breseq ⭐ 126
breseq is a computational pipeline for finding mutations relative to a reference sequence in short-read DNA resequencing data. It is intended for haploid microbial genomes (<20 Mb). breseq is a command line tool implemented in C++ and R.
most recent commit 4 months ago
Branch ⭐ 122
Boosting RNA-Seq assemblies with partial or related genomic sequences
most recent commit 10 years ago
Gena_lm ⭐ 120
GENA-LM is a transformer masked language model trained on human DNA sequence.
most recent commit 5 months ago
Eager ⭐ 112
A fully reproducible and state-of-the-art ancient DNA analysis pipeline
most recent commit 3 months ago
Dna ⭐ 86
The DNA of Nicholas Cerminara
most recent commit 11 years ago
Referenceseeker ⭐ 85
Rapid determination of appropriate reference genomes.
total releases 12most recent commit 3 months ago
Verifybamid ⭐ 78
VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.
most recent commit 4 months ago
Arv ⭐ 75
A fast 23andMe DNA parser and inferrer for Python
total releases 11most recent commit 4 years ago
Ichorcna ⭐ 73
Estimating tumor fraction in cell-free DNA from ultra-low-pass whole genome sequencing.
most recent commit 4 years ago
Dnabert_2 ⭐ 72
The official implementation of DNABERT-2.
most recent commit 6 months ago
Dna Traits ⭐ 64
A fast 23andMe genome text file parser, now superseded by arv
most recent commit 6 years ago
Catch ⭐ 63
A package for designing compact and comprehensive capture probe sets.
most recent commit 6 months ago
Dnaism ⭐ 57
Horizon chart js library for DNA data.
dependent packages 3total releases 8most recent commit 8 years agonpm dnaism} Downloads
The 6 Most Depended On Genome Dna Open Source Projects
Pyfastx ⭐ 211
a python package for fast random access to sequences from plain and gzipped FASTA/Q files
dependent packages 20total releases 68latest release November 25, 2023most recent commit 5 months agopypi pyfastx} Downloads
Genoset Norovirus ⭐ 14
Determines if a genome is immune to norovirus (rs601338)
dependent packages 4total releases 3latest release April 19, 2015most recent commit 9 years agonpm genoset-norovirus} Downloads
Dna2json ⭐ 357
Formats your genome file as JSON
dependent packages 4total releases 14latest release July 13, 2017most recent commit 7 years agonpm dna2json} Downloads
Dnaism ⭐ 57
Horizon chart js library for DNA data.
dependent packages 3total releases 8latest release October 31, 2015most recent commit 8 years agonpm dnaism} Downloads
Gatk ⭐ 1,576
Official code repository for GATK versions 4 and up
dependent packages 2total releases 46latest release March 16, 2023most recent commit a month ago
Genomelake ⭐ 37
Simple and efficient access to genomic data for deep learning models.
dependent packages 1total releases 4latest release April 14, 2018most recent commit 4 years agopypi genomelake} Downloads
The 10 Latest Releases In Genome Dna Open Source Projects
Pyfastx ⭐ 211
a python package for fast random access to sequences from plain and gzipped FASTA/Q files
dependent packages 20total releases 68latest release November 25, 2023most recent commit 5 months agopypi pyfastx} Downloads
Crisprdesignr ⭐ 10
Software used to design guide RNA sequences for CRISPR/Cas9 genome editing
total releases 3latest release April 12, 2023most recent commit a year ago
Gatk ⭐ 1,576
Official code repository for GATK versions 4 and up
dependent packages 2total releases 46latest release March 16, 2023most recent commit a month ago
Referenceseeker ⭐ 85
Rapid determination of appropriate reference genomes.
total releases 12latest release January 14, 2022most recent commit 3 months ago
Libis ⭐ 5
total releases 30latest release December 08, 2020most recent commit 3 years ago
Nucdiff ⭐ 27
In-depth characterization and annotation of differences between two sets of DNA sequences
total releases 4latest release May 18, 2020most recent commit 4 years ago
Kameris ⭐ 7
A fast, user-friendly analysis and evaluation toolkit for some DNA sequence classification tasks
total releases 23latest release September 22, 2018most recent commit 6 years ago
Genomelake ⭐ 37
Simple and efficient access to genomic data for deep learning models.
dependent packages 1total releases 4latest release April 14, 2018most recent commit 4 years agopypi genomelake} Downloads
Mbin ⭐ 21
mBin: a methylation-based binning framework for metagenomic SMRT sequencing reads
total releases 6latest release March 20, 2018most recent commit 3 years ago
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