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The Top 23 Dna Fasta Open Source Projects

Open source projects categorized as Dna Fasta
Categories > Science > Dna
Categories > Fasta
Poly ⭐ 620
A Go package for engineering organisms.
most recent commit 3 months ago
Pyfaidx ⭐ 427
Efficient pythonic random access to fasta subsequences
dependent packages 119total releases 86most recent commit 3 months agopypi pyfaidx} Downloads
Htsjdk ⭐ 271
A Java API for high-throughput sequencing data (HTS) formats.
dependent packages 87total releases 78most recent commit 4 months ago
Pyfastx ⭐ 211
a python package for fast random access to sequences from plain and gzipped FASTA/Q files
dependent packages 20total releases 68most recent commit 5 months agopypi pyfastx} Downloads
Seqviz ⭐ 191
a JavaScript DNA, RNA, and protein sequence viewer
dependent packages 2total releases 2most recent commit 3 months agonpm @phantomas1234/seqviz} Downloads
Aligngraph ⭐ 165
Algorithm for secondary de novo genome assembly guided by closely related references
most recent commit 4 years ago
Genomics ⭐ 154
A collection of scripts and notes related to genomics and bioinformatics
most recent commit 2 years ago
Pydna ⭐ 140
Clone with Python! Data structures for double stranded DNA & simulation of homologous recombination, Gibson assembly, cut & paste cloning.
dependent packages 7total releases 110most recent commit 4 months agopypi pydna} Downloads
Branch ⭐ 122
Boosting RNA-Seq assemblies with partial or related genomic sequences
most recent commit 10 years ago
Chiron ⭐ 114
A basecaller for Oxford Nanopore Technologies' sequencers
total releases 24most recent commit a year ago
Fasta36 ⭐ 95
Git repository for FASTA36 sequence comparison software
most recent commit 7 months ago
Cljam ⭐ 87
A DNA Sequence Alignment/Map (SAM) library for Clojure
total releases 37most recent commit 3 months ago
Cobs ⭐ 58
COBS - Compact Bit-Sliced Signature Index (for Genomic k-Mer Data or q-Grams)
most recent commit 2 years ago
Any2fasta ⭐ 54
Convert various sequence formats to FASTA
most recent commit 5 years ago
Gccontent Benchmark ⭐ 49
Benchmarking different languages for a simple bioinformatics task (Counting the GC fraction of DNA in a FASTA file)
most recent commit a year ago
Sequence_manipulation_suite ⭐ 45
A collection of simple JavaScript programs for generating, formatting, and analyzing short DNA and protein sequences. The Sequence Manipulation Suite is commonly used by molecular biologists, for teaching purposes, and for program and algorithm testing.
most recent commit 7 months ago
Fluentdna ⭐ 43
FluentDNA allows you to browse sequence data of any size using a zooming visualization similar to Google Maps. You can use FluentDNA as a standalone program or as a python module for your own bioinformatics projects.
total releases 3most recent commit 3 years ago
Antonie ⭐ 36
Antonie is an integrated, robust, reliable and fast processor of DNA reads
most recent commit 5 years ago
Kseqpp ⭐ 34
Fast FASTA/Q parser and writer (C++ re-implementation of kseq library)
most recent commit a year ago
Naf ⭐ 32
Nucleotide Archival Format - Compressed file format for DNA/RNA/protein sequences
most recent commit 2 years ago
Radia ⭐ 27
RADIA: RNA and DNA Integrated Analysis for Somatic Mutation Detection
most recent commit 4 years ago
Taxondna ⭐ 26
Taxonomy-aware DNA sequence processing toolkit
most recent commit 2 years ago
Orfipy ⭐ 25
Fast and flexible ORF finder
total releases 4most recent commit 2 years ago
The 6 Most Depended On Dna Fasta Open Source Projects
Pyfaidx ⭐ 427
Efficient pythonic random access to fasta subsequences
dependent packages 119total releases 86latest release September 22, 2023most recent commit 3 months agopypi pyfaidx} Downloads
Htsjdk ⭐ 271
A Java API for high-throughput sequencing data (HTS) formats.
dependent packages 87total releases 78latest release October 13, 2023most recent commit 4 months ago
Pyfastx ⭐ 211
a python package for fast random access to sequences from plain and gzipped FASTA/Q files
dependent packages 20total releases 68latest release November 25, 2023most recent commit 5 months agopypi pyfastx} Downloads
Seqviz ⭐ 191
a JavaScript DNA, RNA, and protein sequence viewer
dependent packages 2total releases 2latest release July 13, 2022most recent commit 3 months agonpm @phantomas1234/seqviz} Downloads
The 10 Latest Releases In Dna Fasta Open Source Projects
Pyfastx ⭐ 211
a python package for fast random access to sequences from plain and gzipped FASTA/Q files
dependent packages 20total releases 68latest release November 25, 2023most recent commit 5 months agopypi pyfastx} Downloads
Htsjdk ⭐ 271
A Java API for high-throughput sequencing data (HTS) formats.
dependent packages 87total releases 78latest release October 13, 2023most recent commit 4 months ago
Pyfaidx ⭐ 427
Efficient pythonic random access to fasta subsequences
dependent packages 119total releases 86latest release September 22, 2023most recent commit 3 months agopypi pyfaidx} Downloads
Seqviz ⭐ 191
a JavaScript DNA, RNA, and protein sequence viewer
dependent packages 2total releases 2latest release July 13, 2022most recent commit 3 months agonpm @phantomas1234/seqviz} Downloads
Orfipy ⭐ 25
Fast and flexible ORF finder
total releases 4latest release July 20, 2021most recent commit 2 years ago
Chiron ⭐ 114
A basecaller for Oxford Nanopore Technologies' sequencers
total releases 24latest release January 09, 2020most recent commit a year ago
Cljam ⭐ 87
A DNA Sequence Alignment/Map (SAM) library for Clojure
total releases 37latest release May 10, 2019most recent commit 3 months ago
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