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The Top 12 Transcriptomics Differential Expression Open Source Projects

Open source projects categorized as Transcriptomics Differential Expression
Categories > Differential Expression
Categories > Transcriptomics
Pydeseq2 ⭐ 470
A Python implementation of the DESeq2 pipeline for bulk RNA-seq DEA.
most recent commit 3 months ago
Diffxpy ⭐ 157
Differential expression analysis for single-cell RNA-seq data.
most recent commit a year ago
Tidybulk ⭐ 153
Brings bulk and pseudobulk transcriptomics to the tidyverse
most recent commit 5 months ago
Scpa ⭐ 33
R package for pathway analysis in scRNA-seq data
most recent commit 6 months ago
Volcano3d ⭐ 28
An R package to plot interactive three-way differential expression analysis
total releases 1most recent commit 8 months ago
Asap ⭐ 24
ASAP : Automated Single-cell Analysis Pipeline
most recent commit 4 months ago
Bioc_2020_tidytranscriptomics ⭐ 18
Workshop on tidytranscriptomics: Performing tidy transcriptomics analyses with tidybulk, tidyverse and tidyheatmap
most recent commit 4 years ago
Rna Seq Pop ⭐ 17
Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data
most recent commit 3 months ago
Curare ⭐ 6
Curare - A customizable and reproducible analysis pipeline for RNA-Seq experiments
total releases 5most recent commit 5 months ago
Sclane ⭐ 6
Characterize gene dynamics over trajectories using GLMs, GEEs, & GLMMs.
most recent commit 4 months ago
Microarraypipeline ⭐ 5
MAAPster is a comprehensive tool to perform transcriptome analysis of human or mouse Affymetrix gene expression data
most recent commit 3 years ago
Genexvis ⭐ 5
An application for exploring and visualizing differential gene expression data created with DESeq2
most recent commit 2 years ago
The 2 Latest Releases In Transcriptomics Differential Expression Open Source Projects
Curare ⭐ 6
Curare - A customizable and reproducible analysis pipeline for RNA-Seq experiments
total releases 5latest release November 16, 2023most recent commit 5 months ago
Volcano3d ⭐ 28
An R package to plot interactive three-way differential expression analysis
total releases 1latest release June 04, 2020most recent commit 8 months ago
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