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The Top 11 R Deseq2 Open Source Projects

Open source projects categorized as R Deseq2
Tidybulk ⭐ 153
Brings bulk and pseudobulk transcriptomics to the tidyverse
most recent commit 4 months ago
Tximport ⭐ 128
Transcript quantification import for modular pipelines
most recent commit 6 months ago
Sartools ⭐ 87
Statistical Analysis of RNA-Seq Tools
most recent commit 2 years ago
Recount ⭐ 40
R package for the recount2 project. Documentation website: http://leekgroup.github.io/recount/
most recent commit a year ago
Intro To R With Dge ⭐ 40
most recent commit 3 years ago
Rna Seq Tutorial For Gene Differential Expression Analysis ⭐ 24
This tutorial is created for educational purpose
most recent commit 4 months ago
Cinar ⭐ 10
A differential and enrichment analyses pipeline for bulk ATAC-seq (and RNA-seq)
total releases 4most recent commit 2 years ago
Regionreport ⭐ 9
Generate HTML report for a set of genomic regions or DESeq2/edgeR results
most recent commit a year ago
Deseq2shiny ⭐ 8
a web-based R shiny application that wraps DESeq2 R package
most recent commit 4 years ago
Ppcseq ⭐ 6
Probabilistic outlier identification for bulk RNA sequencing data
most recent commit 7 months ago
Methods ⭐ 5
Some of the analytical processes and tools we use to provide rigorous and actionable results to our clients.
most recent commit a year ago
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