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The Top 20 Deep Learning Single Cell Open Source Projects

Open source projects categorized as Deep Learning Single Cell
Categories > Machine Learning > Deep Learning
Categories > Single Cell
Scarches ⭐ 294
Reference mapping for single-cell genomics
dependent packages 2total releases 28most recent commit 3 months agopypi scArches} Downloads
Glue ⭐ 294
Graph-linked unified embedding for single-cell multi-omics data integration
most recent commit 5 months ago
Dance ⭐ 284
DANCE: A Deep Learning Library and Benchmark Platform for Single-Cell Analysis
total releases 4most recent commit 3 months ago
Scgen ⭐ 215
Single cell perturbation prediction
dependent packages 2total releases 9most recent commit 7 months agopypi scgen} Downloads
Deepcpg ⭐ 108
Deep neural networks for predicting CpG methylation
total releases 8most recent commit 5 years ago
Scdeepsort ⭐ 93
Cell-type Annotation for Single-cell Transcriptomics using Deep Learning with a Weighted Graph Neural Network
most recent commit 9 months ago
Cell_blast ⭐ 74
A BLAST-like toolkit for large-scale scRNA-seq data querying and annotation.
total releases 8most recent commit 9 months ago
Scalex ⭐ 55
Online single-cell data integration through projecting heterogeneous datasets into a common cell-embedding space
total releases 21most recent commit 6 months ago
Trvae ⭐ 53
Conditional out-of-distribution prediction
total releases 5most recent commit 2 years ago
Slat ⭐ 52
Spatial-Linked Alignment Tool
total releases 2most recent commit 4 months ago
Scvae ⭐ 52
Deep learning for single-cell transcript counts
total releases 10most recent commit 4 years ago
Fava ⭐ 23
Functional Associations using Variational Autoencoders
most recent commit 4 months ago
Scdeepcluster_pytorch ⭐ 22
Pytorch implementation of scDeepCluster for Single Cell RNA-seq data
most recent commit 5 months ago
Deepcycle ⭐ 19
Cell cycle inference in single-cell RNA-seq
most recent commit a year ago
Sisua ⭐ 16
SemI-SUpervised generative Autoencoder models for single cell data
total releases 7most recent commit 3 years ago
Disc ⭐ 7
A highly scalable and accurate inference of gene expression and structure for single-cell transcriptomes using semi-supervised deep learning.
total releases 40most recent commit 3 years ago
Nvtk ⭐ 6
NvTK (NvwaToolKit), is a systemmatic and easy-using deep learning software in single-cell genomics.
most recent commit a year ago
Genomap ⭐ 5
Cartography of Genomic Interactions Enables Deep Analysis of Single-Cell Expression Data (Nature Communications, 2023)
total releases 24most recent commit 8 months ago
Digitaldlsorter ⭐ 5
digitalDLSorteR: An R package to deconvolute bulk RNA-Seq using scRNA-Seq data
most recent commit a year ago
Scdeepsort_performance_comparison ⭐ 5
The source code and results for different methods on annotating external testing datsets of human and mouse.
most recent commit 3 years ago
The 2 Most Depended On Deep Learning Single Cell Open Source Projects
Scarches ⭐ 294
Reference mapping for single-cell genomics
dependent packages 2total releases 28latest release December 08, 2023most recent commit 3 months agopypi scArches} Downloads
Scgen ⭐ 215
Single cell perturbation prediction
dependent packages 2total releases 9latest release April 25, 2022most recent commit 7 months agopypi scgen} Downloads
The 10 Latest Releases In Deep Learning Single Cell Open Source Projects
Scarches ⭐ 294
Reference mapping for single-cell genomics
dependent packages 2total releases 28latest release December 08, 2023most recent commit 3 months agopypi scArches} Downloads
Dance ⭐ 284
DANCE: A Deep Learning Library and Benchmark Platform for Single-Cell Analysis
total releases 4latest release December 04, 2023most recent commit 3 months ago
Slat ⭐ 52
Spatial-Linked Alignment Tool
total releases 2latest release April 17, 2023most recent commit 4 months ago
Cell_blast ⭐ 74
A BLAST-like toolkit for large-scale scRNA-seq data querying and annotation.
total releases 8latest release February 08, 2023most recent commit 9 months ago
Scgen ⭐ 215
Single cell perturbation prediction
dependent packages 2total releases 9latest release April 25, 2022most recent commit 7 months agopypi scgen} Downloads
Trvae ⭐ 53
Conditional out-of-distribution prediction
total releases 5latest release August 04, 2020most recent commit 2 years ago
Scvae ⭐ 52
Deep learning for single-cell transcript counts
total releases 10latest release June 30, 2020most recent commit 4 years ago
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