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The Top 23 Deep Learning Genomics Open Source Projects

Open source projects categorized as Deep Learning Genomics
Categories > Machine Learning > Deep Learning
Categories > Science > Genomics
Deepvariant ⭐ 2,978
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
most recent commit 5 months ago
Deeplearning Biology ⭐ 1,846
A list of deep learning implementations in biology
most recent commit a year ago
Deep Review ⭐ 1,186
A collaboratively written review paper on deep learning, genomics, and precision medicine
most recent commit 2 years ago
Healthcare_ml ⭐ 426
A curated list of ML|NLP resources for healthcare.
most recent commit a year ago
Enformer Pytorch ⭐ 359
Implementation of Enformer, Deepmind's attention network for predicting gene expression, in Pytorch
dependent packages 1total releases 98most recent commit 4 months agopypi enformer-pytorch} Downloads
Nucleotide Transformer ⭐ 305
🧬 Nucleotide Transformer: Building and Evaluating Robust Foundation Models for Human Genomics
most recent commit 3 months ago
Dna Diffusion ⭐ 297
🧬 Generative modeling of regulatory DNA sequences with diffusion probabilistic models 💨
total releases 1most recent commit 3 months ago
Dragonn ⭐ 245
A toolkit to learn how to model and interpret regulatory sequence data using deep learning.
most recent commit 2 years ago
Janggu ⭐ 205
Deep learning infrastructure for genomics
total releases 19most recent commit 3 years ago
Deep Rules ⭐ 198
Ten Quick Tips for Deep Learning in Biology
most recent commit 2 years ago
Clair3 ⭐ 191
Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling
most recent commit 3 months ago
Deep Learning Genomics Primer ⭐ 137
Contains files for the deep learning in genomics primer.
most recent commit 5 years ago
Neusomatic ⭐ 124
NeuSomatic: Deep convolutional neural networks for accurate somatic mutation detection
most recent commit 3 years ago
Ohmnet ⭐ 75
OhmNet: Representation learning in multi-layer graphs
most recent commit 4 years ago
Machine Learning Resource ⭐ 60
most recent commit 3 months ago
Awesome Structural Bioinformatics ⭐ 54
Structural Bioinformatics is awesome. Throw your textbook in the garbage, light the garbage can on fire, and blend the ashes into your cold brew almond milk latte and read this.
most recent commit a year ago
Scvae ⭐ 52
Deep learning for single-cell transcript counts
total releases 10most recent commit 4 years ago
Genomic_benchmarks ⭐ 52
Benchmarks for classification of genomic sequences
total releases 8most recent commit 5 months ago
Dna Nn ⭐ 51
Model and predict short DNA sequence features with neural networks
most recent commit 5 years ago
Flash Genomics Model ⭐ 49
My own attempt at a long context genomics model, leveraging recent advances in long context attention modeling (Flash Attention + other hierarchical methods)
most recent commit 10 months ago
C.origami ⭐ 47
C.Origami, a prediction and screening framework for cell type-specific 3D chromatin structure.
total releases 1most recent commit 4 months ago
Deep Neural Networks Healthcare ⭐ 46
Tangible and Practical Deep Learning Projects Repository for Healthcare such as Cancer, Drug Discovery, Genomic and More
most recent commit 6 years ago
Deepsomatic ⭐ 45
DeepSomatic is an analysis pipeline that uses a deep neural network to call somatic variants from tumor-normal sequencing data.
most recent commit 6 months ago
The 10 Latest Releases In Deep Learning Genomics Open Source Projects
Enformer Pytorch ⭐ 359
Implementation of Enformer, Deepmind's attention network for predicting gene expression, in Pytorch
dependent packages 1total releases 98latest release November 03, 2023most recent commit 4 months agopypi enformer-pytorch} Downloads
C.origami ⭐ 47
C.Origami, a prediction and screening framework for cell type-specific 3D chromatin structure.
total releases 1latest release November 28, 2022most recent commit 4 months ago
Genomic_benchmarks ⭐ 52
Benchmarks for classification of genomic sequences
total releases 8latest release August 10, 2022most recent commit 5 months ago
Mimsi ⭐ 12
Microsatellite Instability Classification using Multiple Instance Learning
total releases 1latest release March 26, 2021most recent commit 2 years ago
Gcgc ⭐ 8
An ML-feature processing library for biological sequences.
total releases 67latest release October 14, 2020most recent commit 4 years ago
Janggu ⭐ 205
Deep learning infrastructure for genomics
total releases 19latest release August 04, 2020most recent commit 3 years ago
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