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The Top 23 Dataset Genome Open Source Projects

Open source projects categorized as Dataset Genome
Categories > Data Processing > Dataset
Categories > Science > Genome
Bactopia ⭐ 281
A flexible pipeline for complete analysis of bacterial genomes
most recent commit 7 months ago
Datasets ⭐ 259
NCBI Datasets is a new resource that lets you easily gather data from across NCBI databases.
total releases 118most recent commit 3 months ago
Layout2im ⭐ 141
Official PyTorch Implementation of Image Generation from Layout - CVPR 2019
most recent commit 2 years ago
Blobtools ⭐ 136
Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets
most recent commit 2 years ago
Bio ⭐ 86
A lightweight and high-performance bioinformatics package in Golang
dependent packages 13total releases 32most recent commit 4 months ago
Minced ⭐ 80
Mining CRISPRs in Environmental Datasets
most recent commit a year ago
Dnabert_2 ⭐ 72
The official implementation of DNABERT-2.
most recent commit 7 months ago
Visual7w Qa Models ⭐ 63
Visual7W visual question answering models
most recent commit 5 years ago
Ancientmetagenomedir ⭐ 61
Repository containing lists of all published ancient metagenomic (and related) samples and libraries
most recent commit 3 months ago
Dchic ⭐ 44
dcHiC: Differential compartment analysis for Hi-C datasets
most recent commit 3 months ago
Agnostos Wf ⭐ 39
most recent commit 10 months ago
Genome Data Integration ⭐ 35
Methods to integrate data from multiple genome sequencing datasets and form consensus variant calls
most recent commit 2 years ago
Depth Vrd ⭐ 33
Improving Visual Relation Detection using Depth Maps (ICPR 2020)
most recent commit 2 years ago
Bioinf Commons ⭐ 30
Bioinformatics library in Kotlin
most recent commit 3 months ago
Mindthegap ⭐ 30
MindTheGap is a SV caller for short read sequencing data dedicated to insertion variants (all sizes and types). It can also be used as a local assembly tool.
most recent commit 2 years ago
Gwaspipeline ⭐ 26
most recent commit 6 years ago
Datasets ⭐ 25
Benchmark datasets for WGS analysis
most recent commit 5 years ago
Vg_cleansing ⭐ 24
dataset cleansing for Visual Genome
most recent commit 7 years ago
Echolocator ⭐ 20
Automated statistical and functional fine-mapping pipeline with extensive API access to datasets.
most recent commit a year ago
Bioweb3d ⭐ 19
Bio3D an HTML5 visualization tool for biological datasets
most recent commit 4 years ago
Helmsman ⭐ 19
highly-efficient & lightweight mutation signature matrix aggregation
most recent commit 3 years ago
Danbing Tk ⭐ 18
Toolkit for VNTR genotyping and repeat-pan genome graph construction
most recent commit 6 months ago
Wgs2ncbi ⭐ 18
Toolkit for preparing genomes for submission to NCBI
most recent commit 3 years ago
The 3 Latest Releases In Dataset Genome Open Source Projects
Datasets ⭐ 259
NCBI Datasets is a new resource that lets you easily gather data from across NCBI databases.
total releases 118latest release December 01, 2023most recent commit 3 months ago
Bio ⭐ 86
A lightweight and high-performance bioinformatics package in Golang
dependent packages 13total releases 32latest release November 11, 2023most recent commit 4 months ago
Biobtree ⭐ 13
A bioinformatics tool to search, map and retrieve identifiers, keywords and attributes
total releases 19latest release March 30, 2021most recent commit 2 years ago
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