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The Top 23 Cwl Open Source Projects

Open source projects categorized as Cwl
Cwl Format ⭐ 9
A very opinionated code formatter for CWL
dependent packages 6total releases 6most recent commit 4 months agopypi cwlformat} Downloads
Kf Rnaseq Workflow ⭐ 9
🔬 RNA-Seq workflow for Kids-First DRC
most recent commit 3 months ago
Cloud Interop Testing ⭐ 9
Interoperable execution of workflows using GA4GH APIs
most recent commit 5 years ago
Capanno ⭐ 9
cwl/wdl/sm/nf files, tool and workflow metadata, and input specifications.
most recent commit 2 years ago
Bcbio_docker ⭐ 8
Automated Docker builds for bcbio
most recent commit 3 years ago
Mariner ⭐ 8
The Gen3 Workflow Execution Service
most recent commit 2 years ago
Cwl2argparse ⭐ 8
cwl2argparse generates an argparse definition from CWL tool arguments that can be pasted in a Python program and used
most recent commit 3 years ago
Pipelines Cwl ⭐ 8
Pipelines developed and used by 4DN-DCIC in Common Workflow Language
most recent commit 4 years ago
Q2cwl ⭐ 8
Prototype interface for automatically generating CWL tools from QIIME 2 actions
most recent commit 4 months ago
Ep3 ⭐ 8
A workflow engine for CWL which aims to have a pluggable architecture
most recent commit 2 years ago
Gales ⭐ 8
Genomic Annotation Logic and Execution System
most recent commit 5 months ago
Cerise ⭐ 7
A REST service for running CWL workflows on remote clusters
most recent commit 5 years ago
Tidycwl ⭐ 7
Tidy Common Workflow Language Tools and Workflows
total releases 5most recent commit 2 years ago
Cwl ⭐ 7
An evaluation script based on the C/W/L framework that is TREC Compatible and provides a replacement for INST_EVAL, RBP_EVAL and TREC_EVAL
most recent commit a year ago
Cwl Inspector ⭐ 7
This tool provides a handy way to inspect properties of tools or workflows written in Common Workflow Language
most recent commit 2 years ago
Cwl For Remote Container Template ⭐ 7
A template to write CWL documents with VSCode with remote container extension
most recent commit 7 months ago
Sbpack ⭐ 7
Command line utility to pack and upload/download CWL to/from SB powered platform
most recent commit 5 months ago
Epigenomics_cwl ⭐ 7
SCREW: A Reproducible Workflow for Single-Cell Epigenomics
most recent commit 6 years ago
Rnaseqsim ⭐ 6
most recent commit 6 years ago
Cwl Mode ⭐ 6
CWL mode for Emacs
most recent commit 3 years ago
Bioc2020rcwl ⭐ 6
Bioconductor toolchain for usage and development of reproducible bioinformatics pipelines
most recent commit 4 years ago
Gatk Cwl Generator ⭐ 6
Generates CWL files from the GATK documentation
most recent commit 6 years ago
Sbg Cgc_course2018 ⭐ 6
IARC course on analyzing TCGA data in the SevenBridges Genomics CancerGenomicsCloud (SBG-CGC)
most recent commit 6 years ago
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