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The Top 23 Python Workflow Cwl Open Source Projects

Open source projects categorized as Python Workflow Cwl
Toil ⭐ 860
A scalable, efficient, cross-platform (Linux/macOS) and easy-to-use workflow engine in pure Python.
dependent packages 12total releases 528most recent commit 3 months agopypi toil} Downloads
Arvados ⭐ 354
An open source platform for managing and analyzing biomedical big data
total releases 9most recent commit 3 months ago
Cwltool ⭐ 314
Common Workflow Language reference implementation
dependent packages 38total releases 430most recent commit 3 months agopypi cwltool} Downloads
Cwl Airflow ⭐ 178
Python package to extend Airflow functionality with CWL1.1 support
total releases 38most recent commit 6 months ago
Reana ⭐ 114
REANA: Reusable research data analysis platform
most recent commit 3 months ago
Rabix ⭐ 104
[Historical] Reproducible Analyses for Bioinformatics
most recent commit 5 years ago
Emg Viral Pipeline ⭐ 98
VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies
most recent commit 7 months ago
Planemo ⭐ 85
Command-line utilities to assist in developing Galaxy and Common Workflow Language artifacts - including tools, workflows, and training materials.
dependent packages 2total releases 134most recent commit 3 months agopypi planemo} Downloads
Benten ⭐ 49
A language server for Common Workflow Language
total releases 15most recent commit 2 years ago
Janis ⭐ 39
[Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows
dependent packages 7total releases 62most recent commit 8 months agopypi janis-pipelines.core} Downloads
Scriptcwl ⭐ 34
Create cwl workflows by writing a simple Python script
dependent packages 1total releases 13most recent commit 4 years agopypi scriptcwl} Downloads
Workflow Service ⭐ 34
Implementation of the GA4GH Workflow Execution Service, a REST service for running workflows
dependent packages 1total releases 14most recent commit 2 years agopypi wes-service} Downloads
Wdl2cwl ⭐ 26
[Experimental] Workflow Definition Language (WDL) to CWL
most recent commit 2 years ago
Pm4ngs ⭐ 21
Project Manager for NGS data analysis
most recent commit 2 years ago
Weaver ⭐ 20
Weaver: Workflow Execution Management Service (EMS); Application, Deployment and Execution Service (ADES); OGC API - Processes; WPS; CWL Application Package
most recent commit 4 months ago
Cwltest ⭐ 16
Framework for testing CWL tools and workflows
dependent packages 3total releases 37most recent commit 3 months agopypi cwltest} Downloads
Dx Cwl ⭐ 14
Import and run CWL workflows on DNAnexus (alpha)
most recent commit 6 years ago
Sevenbridges Cwl ⭐ 14
Seven Bridges Python library for programatic generation of CWL workflows.
most recent commit 3 years ago
Clihelpparser ⭐ 13
Library for reading the output from CLI help commands, and generating machine readable schemas (CWL etc)
most recent commit 3 years ago
Sbpack ⭐ 7
Command line utility to pack and upload/download CWL to/from SB powered platform
most recent commit 5 months ago
Cerise ⭐ 7
A REST service for running CWL workflows on remote clusters
most recent commit 5 years ago
Rnaseqsim ⭐ 6
most recent commit 6 years ago
Sevenbridges Cwl Draft2 Upgrader ⭐ 6
Command line tool to upgrade sbg:draft2 to CWL v1.0.
most recent commit 4 months ago
The 8 Most Depended On Python Workflow Cwl Open Source Projects
Cwltool ⭐ 314
Common Workflow Language reference implementation
dependent packages 38total releases 430latest release December 07, 2023most recent commit 3 months agopypi cwltool} Downloads
Toil ⭐ 860
A scalable, efficient, cross-platform (Linux/macOS) and easy-to-use workflow engine in pure Python.
dependent packages 12total releases 528latest release July 27, 2023most recent commit 3 months agopypi toil} Downloads
Janis ⭐ 39
[Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows
dependent packages 7total releases 62latest release August 30, 2023most recent commit 8 months agopypi janis-pipelines.core} Downloads
Cwltest ⭐ 16
Framework for testing CWL tools and workflows
dependent packages 3total releases 37latest release May 21, 2022most recent commit 3 months agopypi cwltest} Downloads
Cwl Upgrader ⭐ 5
Upgrade CWL syntax to a newer version
dependent packages 2total releases 24latest release November 13, 2023most recent commit 3 months agopypi cwl-upgrader} Downloads
Scriptcwl ⭐ 34
Create cwl workflows by writing a simple Python script
dependent packages 1total releases 13latest release August 11, 2019most recent commit 4 years agopypi scriptcwl} Downloads
Workflow Service ⭐ 34
Implementation of the GA4GH Workflow Execution Service, a REST service for running workflows
dependent packages 1total releases 14latest release April 01, 2022most recent commit 2 years agopypi wes-service} Downloads
The 10 Latest Releases In Python Workflow Cwl Open Source Projects
Cwltool ⭐ 314
Common Workflow Language reference implementation
dependent packages 38total releases 430latest release December 07, 2023most recent commit 3 months agopypi cwltool} Downloads
Cwl Upgrader ⭐ 5
Upgrade CWL syntax to a newer version
dependent packages 2total releases 24latest release November 13, 2023most recent commit 3 months agopypi cwl-upgrader} Downloads
Arvados ⭐ 354
An open source platform for managing and analyzing biomedical big data
total releases 9latest release September 21, 2023most recent commit 3 months ago
Janis ⭐ 39
[Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows
dependent packages 7total releases 62latest release August 30, 2023most recent commit 8 months agopypi janis-pipelines.core} Downloads
Toil ⭐ 860
A scalable, efficient, cross-platform (Linux/macOS) and easy-to-use workflow engine in pure Python.
dependent packages 12total releases 528latest release July 27, 2023most recent commit 3 months agopypi toil} Downloads
Cwltest ⭐ 16
Framework for testing CWL tools and workflows
dependent packages 3total releases 37latest release May 21, 2022most recent commit 3 months agopypi cwltest} Downloads
Workflow Service ⭐ 34
Implementation of the GA4GH Workflow Execution Service, a REST service for running workflows
dependent packages 1total releases 14latest release April 01, 2022most recent commit 2 years agopypi wes-service} Downloads
Cwl Airflow ⭐ 178
Python package to extend Airflow functionality with CWL1.1 support
total releases 38latest release September 21, 2021most recent commit 6 months ago
Benten ⭐ 49
A language server for Common Workflow Language
total releases 15latest release January 05, 2021most recent commit 2 years ago
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