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The Top 23 Python Cwl Open Source Projects

Open source projects categorized as Python Cwl
Toil ⭐ 860
A scalable, efficient, cross-platform (Linux/macOS) and easy-to-use workflow engine in pure Python.
dependent packages 12total releases 528most recent commit 3 months agopypi toil} Downloads
Arvados ⭐ 354
An open source platform for managing and analyzing biomedical big data
total releases 9most recent commit 3 months ago
Cwltool ⭐ 314
Common Workflow Language reference implementation
dependent packages 38total releases 430most recent commit 3 months agopypi cwltool} Downloads
Cwl Airflow ⭐ 178
Python package to extend Airflow functionality with CWL1.1 support
total releases 38most recent commit 6 months ago
Reana ⭐ 114
REANA: Reusable research data analysis platform
most recent commit 3 months ago
Rabix ⭐ 104
[Historical] Reproducible Analyses for Bioinformatics
most recent commit 5 years ago
Emg Viral Pipeline ⭐ 98
VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies
most recent commit 7 months ago
Planemo ⭐ 85
Command-line utilities to assist in developing Galaxy and Common Workflow Language artifacts - including tools, workflows, and training materials.
dependent packages 2total releases 134most recent commit 3 months agopypi planemo} Downloads
Tibanna ⭐ 68
Tibanna helps you run your genomic pipelines on Amazon cloud (AWS). It is used by the 4DN DCIC (4D Nucleome Data Coordination and Integration Center) to process data. Tibanna supports CWL/WDL (w/ docker), Snakemake (w/ conda) and custom Docker/shell command.
dependent packages 1total releases 280most recent commit 3 months agopypi tibanna} Downloads
Genomes Pipeline ⭐ 63
MGnify genome analysis pipeline
most recent commit 3 months ago
Benten ⭐ 49
A language server for Common Workflow Language
total releases 15most recent commit 2 years ago
Janis ⭐ 39
[Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows
dependent packages 7total releases 62most recent commit 8 months agopypi janis-pipelines.core} Downloads
Calrissian ⭐ 37
CWL on Kubernetes
total releases 19most recent commit 5 months ago
Scriptcwl ⭐ 34
Create cwl workflows by writing a simple Python script
dependent packages 1total releases 13most recent commit 4 years agopypi scriptcwl} Downloads
Workflow Service ⭐ 34
Implementation of the GA4GH Workflow Execution Service, a REST service for running workflows
dependent packages 1total releases 14most recent commit 2 years agopypi wes-service} Downloads
Cwl Utils ⭐ 30
Python utilities for CWL
dependent packages 13total releases 32most recent commit 3 months agopypi cwl-utils} Downloads
Wdl2cwl ⭐ 26
[Experimental] Workflow Definition Language (WDL) to CWL
most recent commit 2 years ago
Pm4ngs ⭐ 21
Project Manager for NGS data analysis
most recent commit 2 years ago
Weaver ⭐ 20
Weaver: Workflow Execution Management Service (EMS); Application, Deployment and Execution Service (ADES); OGC API - Processes; WPS; CWL Application Package
most recent commit 4 months ago
Cwltest ⭐ 16
Framework for testing CWL tools and workflows
dependent packages 3total releases 37most recent commit 3 months agopypi cwltest} Downloads
Cwl ⭐ 14
An evaluation script based on the C/W/L framework that is TREC Compatible and provides a replacement for TREC_EVAL and independent scripts for INST, RBP, TBG and U-Measure, etc. All measurements are reported in the same units making all metrics directly comparable.
total releases 9most recent commit a year ago
Dx Cwl ⭐ 14
Import and run CWL workflows on DNAnexus (alpha)
most recent commit 6 years ago
Sevenbridges Cwl ⭐ 14
Seven Bridges Python library for programatic generation of CWL workflows.
most recent commit 3 years ago
The 10 Most Depended On Python Cwl Open Source Projects
Cwltool ⭐ 314
Common Workflow Language reference implementation
dependent packages 38total releases 430latest release December 07, 2023most recent commit 3 months agopypi cwltool} Downloads
Cwl Utils ⭐ 30
Python utilities for CWL
dependent packages 13total releases 32latest release December 01, 2023most recent commit 3 months agopypi cwl-utils} Downloads
Toil ⭐ 860
A scalable, efficient, cross-platform (Linux/macOS) and easy-to-use workflow engine in pure Python.
dependent packages 12total releases 528latest release July 27, 2023most recent commit 3 months agopypi toil} Downloads
Janis ⭐ 39
[Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows
dependent packages 7total releases 62latest release August 30, 2023most recent commit 8 months agopypi janis-pipelines.core} Downloads
Cwltest ⭐ 16
Framework for testing CWL tools and workflows
dependent packages 3total releases 37latest release May 21, 2022most recent commit 3 months agopypi cwltest} Downloads
Cwl Upgrader ⭐ 5
Upgrade CWL syntax to a newer version
dependent packages 2total releases 24latest release November 13, 2023most recent commit 3 months agopypi cwl-upgrader} Downloads
Workflow Service ⭐ 34
Implementation of the GA4GH Workflow Execution Service, a REST service for running workflows
dependent packages 1total releases 14latest release April 01, 2022most recent commit 2 years agopypi wes-service} Downloads
Scriptcwl ⭐ 34
Create cwl workflows by writing a simple Python script
dependent packages 1total releases 13latest release August 11, 2019most recent commit 4 years agopypi scriptcwl} Downloads
The 10 Latest Releases In Python Cwl Open Source Projects
Cwltool ⭐ 314
Common Workflow Language reference implementation
dependent packages 38total releases 430latest release December 07, 2023most recent commit 3 months agopypi cwltool} Downloads
Cwl Utils ⭐ 30
Python utilities for CWL
dependent packages 13total releases 32latest release December 01, 2023most recent commit 3 months agopypi cwl-utils} Downloads
Calrissian ⭐ 37
CWL on Kubernetes
total releases 19latest release November 23, 2023most recent commit 5 months ago
Cwl Upgrader ⭐ 5
Upgrade CWL syntax to a newer version
dependent packages 2total releases 24latest release November 13, 2023most recent commit 3 months agopypi cwl-upgrader} Downloads
Arvados ⭐ 354
An open source platform for managing and analyzing biomedical big data
total releases 9latest release September 21, 2023most recent commit 3 months ago
Janis ⭐ 39
[Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows
dependent packages 7total releases 62latest release August 30, 2023most recent commit 8 months agopypi janis-pipelines.core} Downloads
Toil ⭐ 860
A scalable, efficient, cross-platform (Linux/macOS) and easy-to-use workflow engine in pure Python.
dependent packages 12total releases 528latest release July 27, 2023most recent commit 3 months agopypi toil} Downloads
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