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The Top 17 Pipeline Cwl Open Source Projects

Open source projects categorized as Pipeline Cwl
Toil ⭐ 860
A scalable, efficient, cross-platform (Linux/macOS) and easy-to-use workflow engine in pure Python.
dependent packages 12total releases 528most recent commit 3 months agopypi toil} Downloads
Pgap ⭐ 263
NCBI Prokaryotic Genome Annotation Pipeline
most recent commit 3 months ago
Analysis Workflows ⭐ 99
Open workflow definitions for genomic analysis from MGI at WUSM.
most recent commit 10 months ago
Emg Viral Pipeline ⭐ 98
VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies
most recent commit 7 months ago
Tibanna ⭐ 68
Tibanna helps you run your genomic pipelines on Amazon cloud (AWS). It is used by the 4DN DCIC (4D Nucleome Data Coordination and Integration Center) to process data. Tibanna supports CWL/WDL (w/ docker), Snakemake (w/ conda) and custom Docker/shell command.
dependent packages 1total releases 280most recent commit 3 months agopypi tibanna} Downloads
Janis ⭐ 39
[Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows
dependent packages 7total releases 62most recent commit 8 months agopypi janis-pipelines.core} Downloads
Nlppln ⭐ 33
NLP pipeline software using common workflow language
total releases 6most recent commit 5 years ago
Pipeline V5 ⭐ 19
This repository contains all CWL descriptions of the MGnify pipeline version 5.0.
most recent commit 8 months ago
Ebi Metagenomics Cwl ⭐ 19
This repository contains the CWL description of the EBI Metagenomics pipeline
most recent commit 3 years ago
Chiron ⭐ 16
Tools and utilities for running Dockerized metagenomics tools in the Cloud
most recent commit 5 years ago
H3abionet16s ⭐ 15
H3ABioNet 16S rDNA diverstity analysis package
most recent commit 5 years ago
Clihelpparser ⭐ 13
Library for reading the output from CLI help commands, and generating machine readable schemas (CWL etc)
most recent commit 3 years ago
Cloudneo ⭐ 13
CWL implementation of CloudNeo: A cloud pipeline for identifying patient-specific tumor neoantigens
most recent commit 5 years ago
Pipelines Cwl ⭐ 8
Pipelines developed and used by 4DN-DCIC in Common Workflow Language
most recent commit 4 years ago
Gales ⭐ 8
Genomic Annotation Logic and Execution System
most recent commit 5 months ago
Epigenomics_cwl ⭐ 7
SCREW: A Reproducible Workflow for Single-Cell Epigenomics
most recent commit 6 years ago
Bioc2020rcwl ⭐ 6
Bioconductor toolchain for usage and development of reproducible bioinformatics pipelines
most recent commit 4 years ago
The 3 Most Depended On Pipeline Cwl Open Source Projects
The 4 Latest Releases In Pipeline Cwl Open Source Projects
Janis ⭐ 39
[Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows
dependent packages 7total releases 62latest release August 30, 2023most recent commit 8 months agopypi janis-pipelines.core} Downloads
Toil ⭐ 860
A scalable, efficient, cross-platform (Linux/macOS) and easy-to-use workflow engine in pure Python.
dependent packages 12total releases 528latest release July 27, 2023most recent commit 3 months agopypi toil} Downloads
Nlppln ⭐ 33
NLP pipeline software using common workflow language
total releases 6latest release January 08, 2019most recent commit 5 years ago
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