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The Top 23 Code Coverage Genome Open Source Projects

Open source projects categorized as Code Coverage Genome
Categories > Software Quality > Code Coverage
Categories > Science > Genome
Mosdepth ⭐ 617
fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing
most recent commit 5 months ago
Coverm ⭐ 237
Read coverage calculator for metagenomics
dependent packages 1total releases 9most recent commit 3 months agocargo coverm} Downloads
Smudgeplot ⭐ 200
Inference of ploidy and heterozygosity structure using whole genome sequencing data
most recent commit 3 months ago
Rasusa ⭐ 156
Randomly subsample sequencing reads to a specified coverage
total releases 11most recent commit 4 months ago
Estimate_genome_size.pl ⭐ 53
Scripts to estimate genome size and coverage from kmer distribution generated by jellyfish
most recent commit a year ago
Cnview ⭐ 50
Visualization and annotation of CNVs from population-scale whole-genome sequencing data
most recent commit 6 years ago
Physalia Lcwgs ⭐ 43
Files for the the Physalia course on Population genomic inference from low-coverage whole-genome sequencing data, Oct 10-13, 2022
most recent commit 7 months ago
Seqcover ⭐ 38
seqcover allows user to view coverage for hundreds of genes and dozens of samples
most recent commit 3 years ago
Ploidyngs ⭐ 35
Explore ploidy levels from NGS data alone
most recent commit a year ago
Organelle_pba ⭐ 23
A software to assemble chloroplast and mitochodrial genomes using PacBio data
most recent commit 6 years ago
Lazyb ⭐ 17
Economic Genome Assembly from Low Coverage Illumina and Nanopore Data
most recent commit 2 years ago
Mgse ⭐ 16
Mapping-based Genome Size Estimation (MGSE) performs an estimation of a genome size based on a read mapping to an existing genome sequence assembly.
most recent commit 2 years ago
Alignstats ⭐ 16
Comprehensive alignment, whole-genome coverage, and capture coverage statistics.
most recent commit 2 years ago
Methylsig ⭐ 14
R package for DNA methylation analysis
most recent commit a year ago
Accucopy ⭐ 13
Accucopy is a computational method that infers Allele-specific Copy Number alterations from low-coverage low-purity tumor sequencing Data.
most recent commit 9 months ago
Amplicon_coverage_plot ⭐ 12
interactive barplot for amplicon sequencing
total releases 10most recent commit a year ago
Sex.deterrmine ⭐ 12
A python script to calculate the relative coverage of X and Y chromosomes, and their associated error bars, from the depth of coverage at specified SNPs.
most recent commit a year ago
Mdibl T3 Wgs Tutorial ⭐ 11
Bacterial Genome Assembly and Assessment
most recent commit 2 years ago
Plws ⭐ 11
Phylogenomics from Low-coverage Whole-genome Sequencing
most recent commit 4 years ago
Solidbin ⭐ 11
A genome binning method for contig binning, based on semi-supervised spectral clustering method.
most recent commit 3 years ago
Nucleosome_ctdna ⭐ 11
Inferring expressed genes by whole-genome sequencing of plasma DNA
most recent commit 8 years ago
Bioscripts ⭐ 10
a bucket of bioinformatics scripts
most recent commit 7 months ago
Grid ⭐ 10
Growth Rate Index (GRiD) measures bacterial growth rate from reference genomes (including draft quality genomes) and metagenomic bins at ultra-low sequencing coverage (> 0.2x).
most recent commit 4 years ago
The 5 Latest Releases In Code Coverage Genome Open Source Projects
Rasusa ⭐ 156
Randomly subsample sequencing reads to a specified coverage
total releases 11latest release April 06, 2023most recent commit 4 months ago
Amplicon_coverage_plot ⭐ 12
interactive barplot for amplicon sequencing
total releases 10latest release January 12, 2023most recent commit a year ago
Bamstats ⭐ 9
A command line tool to compute mapping statistics from a BAM file
total releases 11latest release March 07, 2022most recent commit 2 years ago
Coverm ⭐ 237
Read coverage calculator for metagenomics
dependent packages 1total releases 9latest release February 24, 2021most recent commit 3 months agocargo coverm} Downloads
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