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The Top 12 R Copy Number Variation Open Source Projects

Open source projects categorized as R Copy Number Variation
Categories > Copy Number Variation
Pcgr ⭐ 234
Personal Cancer Genome Reporter (PCGR)
most recent commit 6 months ago
Clincnv ⭐ 65
Detection of copy number changes in Germline/Trio/Somatic contexts in NGS data
most recent commit 5 months ago
Titancna ⭐ 59
Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer
most recent commit 3 years ago
Doabsolute ⭐ 31
📦 Automate Absolute Copy Number Calling using 'ABSOLUTE' package
most recent commit 5 months ago
Aceseqworkflow ⭐ 22
Allele-specific copy number estimation with whole genome sequencing
most recent commit a year ago
Viscap ⭐ 18
VisCap is an open flexible, software program targeted to clinical laboratories for inference and visualization of germline copy number variants (CNVs) from targeted next-generation sequencing data. For algorithmic details, see Pugh TJ et al. Genet Med. 2016 Jul;18(7):712-9.
most recent commit 4 years ago
Postre ⭐ 13
POSTRE: Prediction Of STRuctural variant Effects
most recent commit a year ago
Cnaqc ⭐ 12
CNAqc - Copy Number Alteration (CNA) Quality Check package
most recent commit 6 months ago
Sequenza ⭐ 8
Workflow for Sequenza, cellularity and ploidy
most recent commit 7 months ago
Copynumberplots ⭐ 6
R package to create plots representing copy number data using karyoploteR
most recent commit 7 months ago
Facets2n ⭐ 5
Algorithm to implement Fraction and Allelic Copy number Estimate from Tumor/normal Sequencing using unmatched normal sample(s) for log ratio calculations
most recent commit 2 years ago
Cnvmetrics ⭐ 5
R Package to compare copy number variant (CNV) results from multiple samples/methods
most recent commit 9 months ago
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