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The Top 23 Pipeline Conda Open Source Projects

Open source projects categorized as Pipeline Conda
Categories > Conda
Categories > Data Processing > Pipeline
Deeplearningproject ⭐ 4,043
An in-depth machine learning tutorial introducing readers to a whole machine learning pipeline from scratch.
most recent commit 4 years ago
Nextflow ⭐ 2,447
A DSL for data-driven computational pipelines
dependent packages 16total releases 250most recent commit 3 months ago
Elyra ⭐ 1,721
Elyra extends JupyterLab with an AI centric approach.
dependent packages 14total releases 111most recent commit 3 months agonpm @elyra/ui-components} Downloads
Sarek ⭐ 299
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
most recent commit 3 months ago
Atac Seq Pipeline ⭐ 290
ENCODE ATAC-seq pipeline
most recent commit a year ago
Bactopia ⭐ 281
A flexible pipeline for complete analysis of bacterial genomes
most recent commit 7 months ago
Chip Seq Pipeline2 ⭐ 188
ENCODE ChIP-seq pipeline
most recent commit a year ago
Maestro ⭐ 181
Single-cell Transcriptome and Regulome Analysis Pipeline
most recent commit 3 years ago
Sunbeam ⭐ 157
A robust, extensible metagenomics pipeline
most recent commit 3 months ago
Comparative Annotation Toolkit ⭐ 137
most recent commit 8 months ago
Atac_dnase_pipelines ⭐ 135
ATAC-seq and DNase-seq processing pipeline
most recent commit 5 years ago
Dropseqpipe ⭐ 134
A SingleCell RNASeq pre-processing snakemake workflow
total releases 2most recent commit a year ago
Skypy ⭐ 111
SkyPy: A package for modelling the Universe.
total releases 6most recent commit 4 months ago
Plant Seg ⭐ 81
A tool for cell instance aware segmentation in densely packed 3D volumetric images
most recent commit 3 months ago
Rescript ⭐ 74
REference Sequence annotation and CuRatIon Pipeline
most recent commit 3 months ago
Tibanna ⭐ 68
Tibanna helps you run your genomic pipelines on Amazon cloud (AWS). It is used by the 4DN DCIC (4D Nucleome Data Coordination and Integration Center) to process data. Tibanna supports CWL/WDL (w/ docker), Snakemake (w/ conda) and custom Docker/shell command.
dependent packages 1total releases 280most recent commit 3 months agopypi tibanna} Downloads
Nanoclust ⭐ 59
NanoCLUST is an analysis pipeline for UMAP-based classification of amplicon-based full-length 16S rRNA nanopore reads
most recent commit a year ago
Ctapipe ⭐ 58
Low-level data processing pipeline software for the Cherenkov Telescope Array
dependent packages 11total releases 25most recent commit 3 months agopypi ctapipe} Downloads
Meteore ⭐ 58
Automatic DNA methylation detection from nanopore tools and their consensus model
most recent commit a year ago
Pore C ⭐ 48
Pore-C support
most recent commit a year ago
Ncov Tools ⭐ 44
Small collection of tools for performing quality control on coronavirus sequencing data and genomes
most recent commit a year ago
Pipelines Nextflow ⭐ 41
A set of workflows written in Nextflow for Genome Annotation.
most recent commit 3 months ago
Strong ⭐ 38
Strain Resolution ON Graphs
most recent commit a year ago
The 4 Most Depended On Pipeline Conda Open Source Projects
Nextflow ⭐ 2,447
A DSL for data-driven computational pipelines
dependent packages 16total releases 250latest release November 24, 2023most recent commit 3 months ago
Elyra ⭐ 1,721
Elyra extends JupyterLab with an AI centric approach.
dependent packages 14total releases 111latest release March 29, 2023most recent commit 3 months agonpm @elyra/ui-components} Downloads
Ctapipe ⭐ 58
Low-level data processing pipeline software for the Cherenkov Telescope Array
dependent packages 11total releases 25latest release September 11, 2023most recent commit 3 months agopypi ctapipe} Downloads
The 10 Latest Releases In Pipeline Conda Open Source Projects
Nextflow ⭐ 2,447
A DSL for data-driven computational pipelines
dependent packages 16total releases 250latest release November 24, 2023most recent commit 3 months ago
Ctapipe ⭐ 58
Low-level data processing pipeline software for the Cherenkov Telescope Array
dependent packages 11total releases 25latest release September 11, 2023most recent commit 3 months agopypi ctapipe} Downloads
Elyra ⭐ 1,721
Elyra extends JupyterLab with an AI centric approach.
dependent packages 14total releases 111latest release March 29, 2023most recent commit 3 months agonpm @elyra/ui-components} Downloads
Mlf Core ⭐ 31
CPU and GPU deterministic and therefore fully reproducible machine learning pipelines using MLflow.
total releases 31latest release December 04, 2021most recent commit 2 years ago
Skypy ⭐ 111
SkyPy: A package for modelling the Universe.
total releases 6latest release November 06, 2021most recent commit 4 months ago
Bohra ⭐ 12
A pipeline for bioinformatics analysis of bacterial genomes
total releases 52latest release March 09, 2021most recent commit 3 years ago
Biodendro ⭐ 6
A package to cluster and visualise MS/MS spectral data
total releases 3latest release February 26, 2021most recent commit 3 years ago
Pyrpipe ⭐ 25
Reproducible bioinformatics pipelines in python. Import any Unix tool/command in python.
total releases 6latest release January 18, 2021most recent commit 3 years ago
Dropseqpipe ⭐ 134
A SingleCell RNASeq pre-processing snakemake workflow
total releases 2latest release July 21, 2017most recent commit a year ago
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