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The Top 23 Comparative Genomics Open Source Projects

Open source projects categorized as Comparative Genomics
Categories > Comparative Genomics
Jcvi ⭐ 650
Python library to facilitate genome assembly, annotation, and comparative genomics
dependent packages 1total releases 97most recent commit 4 months agopypi jcvi} Downloads
Gggenomes ⭐ 518
A grammar of graphics for comparative genomics
most recent commit 3 months ago
Pycirclize ⭐ 476
Circular visualization in Python (Circos Plot, Chord Diagram)
dependent packages 3total releases 13most recent commit 4 months agopypi pycirclize} Downloads
Anvio ⭐ 396
An analysis and visualization platform for 'omics data
most recent commit 3 months ago
Ideogram ⭐ 265
Chromosome visualization for the web
dependent packages 8total releases 76most recent commit 3 months agonpm ideogram} Downloads
Funannotate ⭐ 261
Eukaryotic Genome Annotation Pipeline
total releases 13most recent commit 5 months ago
Ppanggolin ⭐ 191
Build a partitioned pangenome graph from microbial genomes
total releases 6most recent commit 3 months ago
Pygenomeviz ⭐ 177
A genome visualization python package for comparative genomics
dependent packages 1total releases 23most recent commit 6 months agopypi pygenomeviz} Downloads
Sibeliaz ⭐ 113
A fast whole-genome aligner based on de Bruijn graphs
most recent commit 2 years ago
Recentrifuge ⭐ 83
Recentrifuge: robust comparative analysis and contamination removal for metagenomics
total releases 77most recent commit 3 months ago
Orthologr ⭐ 68
Genome wide orthology inference and dNdS estimation
most recent commit 6 months ago
Ensembl Compara ⭐ 46
The Ensembl Compara Perl API and SQL schema
most recent commit 3 months ago
Quota Alignment ⭐ 44
Guided synteny alignment between duplicated genomes (within specified quota constraint)
most recent commit 7 years ago
Genera ⭐ 41
genEra is a fast and easy-to-use command-line tool that estimates the age of the last common ancestor of protein-coding gene families.
most recent commit 5 months ago
Twopaco ⭐ 39
A fast constructor of the compressed de Bruijn graph from many genomes
most recent commit 2 years ago
Aniclustermap ⭐ 38
A tool for drawing ANI clustermap between all-vs-all microbial genomes
total releases 5most recent commit 6 months ago
Gcv ⭐ 32
Federating genomes with love (and synteny derived from functional annotations)
most recent commit 5 months ago
Orthogene ⭐ 31
🧬 o r t h o g e n e 🧬✨✨✨✨✨✨✨ Interspecies gene mapping✨✨✨✨✨ 🦠 🔁 🌱 🔁 🌳 🔁 🍎 🔁 🍊 🔁 🪱 🔁 🪰 🔁 🐟 🔁 🦎 🔁 🐓 🔁 🦇 🔁 🐄 🔁 🐖 🔁 🐐 🔁 🐎 🔁 🐈 🔁 🐕 🔁 🐁 🔁 🐒 🔁 🦧 🔁 🦍 🔁 🏃‍♀️
most recent commit 4 months ago
Panseq ⭐ 31
Pan-genomic sequence analysis
most recent commit 6 years ago
Ezaai ⭐ 29
EzAAI - High Throughput Prokaryotic AAI Calculator
most recent commit 3 months ago
Zol ⭐ 28
zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)
total releases 2most recent commit 4 months ago
Pcg ⭐ 28
𝙋𝙝𝙮𝙡𝙤𝙜𝙚𝙣𝙚𝙩𝙞𝙘 𝘾𝙤𝙢𝙥𝙤𝙣𝙚𝙣𝙩 𝙂𝙧𝙖𝙥𝙝 ⸺ Haskell program and libraries for general phylogenetic graph search
most recent commit 2 years ago
Cogclassifier ⭐ 27
A tool for classifying prokaryote protein sequences into COG(Cluster of Orthologous Genes) functional category
dependent packages 1total releases 7most recent commit 6 months agopypi cogclassifier} Downloads
The 5 Most Depended On Comparative Genomics Open Source Projects
Ideogram ⭐ 265
Chromosome visualization for the web
dependent packages 8total releases 76latest release September 05, 2023most recent commit 3 months agonpm ideogram} Downloads
Pycirclize ⭐ 476
Circular visualization in Python (Circos Plot, Chord Diagram)
dependent packages 3total releases 13latest release July 20, 2023most recent commit 4 months agopypi pycirclize} Downloads
Cogclassifier ⭐ 27
A tool for classifying prokaryote protein sequences into COG(Cluster of Orthologous Genes) functional category
dependent packages 1total releases 7latest release September 07, 2022most recent commit 6 months agopypi cogclassifier} Downloads
Pygenomeviz ⭐ 177
A genome visualization python package for comparative genomics
dependent packages 1total releases 23latest release October 28, 2023most recent commit 6 months agopypi pygenomeviz} Downloads
Jcvi ⭐ 650
Python library to facilitate genome assembly, annotation, and comparative genomics
dependent packages 1total releases 97latest release August 30, 2023most recent commit 4 months agopypi jcvi} Downloads
The 10 Latest Releases In Comparative Genomics Open Source Projects
Biokit ⭐ 20
a versatile toolkit for processing and analyzing diverse types of sequence data
total releases 13latest release November 11, 2023most recent commit 4 months ago
Aniclustermap ⭐ 38
A tool for drawing ANI clustermap between all-vs-all microbial genomes
total releases 5latest release November 07, 2023most recent commit 6 months ago
Pygenomeviz ⭐ 177
A genome visualization python package for comparative genomics
dependent packages 1total releases 23latest release October 28, 2023most recent commit 6 months agopypi pygenomeviz} Downloads
Ideogram ⭐ 265
Chromosome visualization for the web
dependent packages 8total releases 76latest release September 05, 2023most recent commit 3 months agonpm ideogram} Downloads
Jcvi ⭐ 650
Python library to facilitate genome assembly, annotation, and comparative genomics
dependent packages 1total releases 97latest release August 30, 2023most recent commit 4 months agopypi jcvi} Downloads
Pycirclize ⭐ 476
Circular visualization in Python (Circos Plot, Chord Diagram)
dependent packages 3total releases 13latest release July 20, 2023most recent commit 4 months agopypi pycirclize} Downloads
Recentrifuge ⭐ 83
Recentrifuge: robust comparative analysis and contamination removal for metagenomics
total releases 77latest release January 16, 2023most recent commit 3 months ago
Cogclassifier ⭐ 27
A tool for classifying prokaryote protein sequences into COG(Cluster of Orthologous Genes) functional category
dependent packages 1total releases 7latest release September 07, 2022most recent commit 6 months agopypi cogclassifier} Downloads
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