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The Top 20 Python Chip Seq Open Source Projects

Open source projects categorized as Python Chip Seq
Categories > Chip Seq
Macs ⭐ 681
MACS -- Model-based Analysis of ChIP-Seq
dependent packages 3total releases 39most recent commit 22 days agopypi MACS2} Downloads
Deeptools ⭐ 644
Tools to process and analyze deep sequencing data.
most recent commit 11 days ago
Chip Seq Analysis ⭐ 586
ChIP-seq analysis notes from Ming Tang
most recent commit 2 years ago
Snakepipes ⭐ 359
Customizable workflows based on snakemake and python for the analysis of NGS data
most recent commit 3 months ago
Seq2science ⭐ 132
Automated and customizable preprocessing of Next-Generation Sequencing data, including full (sc)ATAC-seq, ChIP-seq, and (sc)RNA-seq workflows. Works equally easy with public as local data.
most recent commit 5 months ago
Reg Gen ⭐ 96
Regulatory Genomics Toolbox: Python library and set of tools for the integrative analysis of high throughput regulatory genomics data.
most recent commit 6 months ago
Spark ⭐ 81
Publication quality NGS track plotting
most recent commit 2 years ago
Pyflow Chipseq ⭐ 55
a snakemake pipeline to process ChIP-seq files from GEO or in-house
most recent commit 4 years ago
Pipeliner ⭐ 44
An open-source and scalable solution to NGS analysis powered by the NIH's Biowulf cluster.
most recent commit 9 months ago
Pygtftk ⭐ 30
A python package and a set of shell commands to handle GTF files
total releases 29most recent commit a year ago
Maxatac ⭐ 24
Transcription Factor Binding Prediction from ATAC-seq and scATAC-seq with Deep Neural Networks
total releases 8most recent commit 5 months ago
Pm4ngs ⭐ 21
Project Manager for NGS data analysis
most recent commit 2 years ago
Open_pipelines ⭐ 17
Pipelines for NGS data preprocessing by the Bock lab and friends
most recent commit 2 years ago
Manorm ⭐ 14
A robust model for quantitative comparison of ChIP-Seq data sets.
most recent commit 4 years ago
Pybedgraph ⭐ 13
A Python package for fast operations on 1-dimensional genomic signal tracks
total releases 25most recent commit 4 years ago
Toolkit ⭐ 13
A toolkit for NGS analysis with Python
total releases 32most recent commit a year ago
Enrichment_analysis ⭐ 10
A Snakemake workflow for performing genomic region set and gene set enrichment analyses using LOLA, GREAT, and GSEApy.
most recent commit 9 months ago
Sargasso ⭐ 6
Sargasso disambiguates mixed-species high-throughput sequencing data.
most recent commit 3 years ago
Decoden ⭐ 6
🌊 Analyse experimental conditions and replicates jointly to remove cell-type specific bias in multi-condition ChIP-Seq
most recent commit 3 months ago
Genespark ⭐ 5
geneSpark is a bioinformatics software program written in Python and Apache Spark for big data epigenetic histone modification ChIP-seq analysis.
most recent commit 8 years ago
The 5 Latest Releases In Python Chip Seq Open Source Projects
Macs ⭐ 681
MACS -- Model-based Analysis of ChIP-Seq
dependent packages 3total releases 39latest release July 21, 2023most recent commit 22 days agopypi MACS2} Downloads
Maxatac ⭐ 24
Transcription Factor Binding Prediction from ATAC-seq and scATAC-seq with Deep Neural Networks
total releases 8latest release May 05, 2022most recent commit 5 months ago
Pybedgraph ⭐ 13
A Python package for fast operations on 1-dimensional genomic signal tracks
total releases 25latest release April 03, 2020most recent commit 4 years ago
Toolkit ⭐ 13
A toolkit for NGS analysis with Python
total releases 32latest release September 23, 2019most recent commit a year ago
Pygtftk ⭐ 30
A python package and a set of shell commands to handle GTF files
total releases 29latest release September 21, 2018most recent commit a year ago
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