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The Top 23 Chip Seq Open Source Projects

Open source projects categorized as Chip Seq
Categories > Chip Seq
Macs ⭐ 681
MACS -- Model-based Analysis of ChIP-Seq
dependent packages 3total releases 39most recent commit a month agopypi MACS2} Downloads
Deeptools ⭐ 644
Tools to process and analyze deep sequencing data.
most recent commit 15 days ago
Chip Seq Analysis ⭐ 586
ChIP-seq analysis notes from Ming Tang
most recent commit 2 years ago
Snakepipes ⭐ 359
Customizable workflows based on snakemake and python for the analysis of NGS data
most recent commit 3 months ago
Training Material ⭐ 284
A collection of Galaxy-related training material
most recent commit 3 months ago
Chipseeker ⭐ 204
🎯 ChIP peak Annotation, Comparison and Visualization
most recent commit 3 months ago
Chipseq ⭐ 144
ChIP-seq peak-calling, QC and differential analysis pipeline.
most recent commit a year ago
Seq2science ⭐ 132
Automated and customizable preprocessing of Next-Generation Sequencing data, including full (sc)ATAC-seq, ChIP-seq, and (sc)RNA-seq workflows. Works equally easy with public as local data.
most recent commit 5 months ago
Chipseq_pipeline ⭐ 103
AQUAS TF and histone ChIP-seq pipeline
most recent commit 2 years ago
Reg Gen ⭐ 96
Regulatory Genomics Toolbox: Python library and set of tools for the integrative analysis of high throughput regulatory genomics data.
most recent commit 6 months ago
Dolphinnext ⭐ 92
A graphical user interface for distributed data processing of high throughput genomics
most recent commit a year ago
Spark ⭐ 81
Publication quality NGS track plotting
most recent commit 2 years ago
Pyflow Chipseq ⭐ 55
a snakemake pipeline to process ChIP-seq files from GEO or in-house
most recent commit 4 years ago
Pipeliner ⭐ 44
An open-source and scalable solution to NGS analysis powered by the NIH's Biowulf cluster.
most recent commit 9 months ago
Protocols 4pub ⭐ 40
Multi-omics analysis protocols by Lyu.
most recent commit 8 months ago
Haystack_bio ⭐ 35
Haystack: Epigenetic Variability and Transcription Factor Motifs Analysis Pipeline
most recent commit 3 years ago
Differentialabundance ⭐ 34
Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq
most recent commit 3 months ago
Epic ⭐ 32
(DEPRECATED) epic: diffuse domain ChIP-Seq caller based on SICER
total releases 52most recent commit 5 years ago
Bioinf Commons ⭐ 30
Bioinformatics library in Kotlin
most recent commit 3 months ago
Gonetics ⭐ 30
Go / Golang Bioinformatics Library
dependent packages 2total releases 2most recent commit 3 years ago
Pygtftk ⭐ 30
A python package and a set of shell commands to handle GTF files
total releases 29most recent commit a year ago
Deepstats ⭐ 27
deepStats: a stastitical toolbox for deeptools and genomic signals
most recent commit 3 years ago
Biotoolbox ⭐ 27
Tools for querying and analysis of genomic data
most recent commit 7 months ago
The 2 Most Depended On Chip Seq Open Source Projects
Macs ⭐ 681
MACS -- Model-based Analysis of ChIP-Seq
dependent packages 3total releases 39latest release July 21, 2023most recent commit a month agopypi MACS2} Downloads
Gonetics ⭐ 30
Go / Golang Bioinformatics Library
dependent packages 2total releases 2latest release August 16, 2021most recent commit 3 years ago
The 10 Latest Releases In Chip Seq Open Source Projects
Macs ⭐ 681
MACS -- Model-based Analysis of ChIP-Seq
dependent packages 3total releases 39latest release July 21, 2023most recent commit a month agopypi MACS2} Downloads
Manorm2 ⭐ 21
MAnorm2 for Normalizing and Comparing ChIP-seq Samples
total releases 3latest release October 28, 2022most recent commit a year ago
Maxatac ⭐ 24
Transcription Factor Binding Prediction from ATAC-seq and scATAC-seq with Deep Neural Networks
total releases 8latest release May 05, 2022most recent commit 5 months ago
Gonetics ⭐ 30
Go / Golang Bioinformatics Library
dependent packages 2total releases 2latest release August 16, 2021most recent commit 3 years ago
Mspc ⭐ 18
Using combined evidence from replicates to evaluate ChIP-seq peaks
total releases 14latest release March 19, 2021most recent commit 3 months ago
Pybedgraph ⭐ 13
A Python package for fast operations on 1-dimensional genomic signal tracks
total releases 25latest release April 03, 2020most recent commit 4 years ago
Toolkit ⭐ 13
A toolkit for NGS analysis with Python
total releases 32latest release September 23, 2019most recent commit a year ago
Workflows ⭐ 12
CWL based Bioinformatics Workflows
total releases 11latest release December 13, 2018most recent commit 3 months ago
Pygtftk ⭐ 30
A python package and a set of shell commands to handle GTF files
total releases 29latest release September 21, 2018most recent commit a year ago
Epic ⭐ 32
(DEPRECATED) epic: diffuse domain ChIP-Seq caller based on SICER
total releases 52latest release August 02, 2018most recent commit 5 years ago
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