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The Top 23 Cell Rna Seq Open Source Projects

Open source projects categorized as Cell Rna Seq
Nichenetr ⭐ 416
NicheNet: predict active ligand-target links between interacting cells
most recent commit 3 months ago
Single Cell Pseudotime ⭐ 367
An overview of algorithms for estimating pseudotime in single-cell RNA-seq data
most recent commit 3 months ago
Sccatch ⭐ 171
Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data
total releases 5most recent commit a year ago
Xpore ⭐ 122
Identification of differential RNA modifications from nanopore direct RNA sequencing
total releases 20most recent commit 5 months ago
Scrnaseq ⭐ 119
A single-cell RNAseq pipeline for 10X genomics data
most recent commit 3 months ago
Alevin Fry ⭐ 115
🐟 🔬🦀 alevin-fry is an efficient and flexible tool for processing single-cell sequencing data, currently focused on single-cell transcriptomics and feature barcoding.
dependent packages 2total releases 10most recent commit 10 months agocargo libradicl} Downloads
Clustifyr ⭐ 93
Infer cell types in scRNA-seq data using bulk RNA-seq or gene sets
most recent commit 5 months ago
Startrac ⭐ 71
STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)
most recent commit 5 months ago
Scnym ⭐ 71
Semi-supervised adversarial neural networks for classification of single cell transcriptomics data
total releases 5most recent commit 4 months ago
Epic ⭐ 68
Repository for the R package EPIC, to Estimate the Proportion of Immune and Cancer cells from bulk gene expression data.
most recent commit 9 months ago
Covid 19 Rna Seq Datasets ⭐ 61
A repository for sharing information on available COVID-19 RNA-Seq datasets
most recent commit 2 years ago
Kallistobustools ⭐ 55
kallisto | bustools workflow for pre-processing single-cell RNA-seq data
most recent commit 3 years ago
Cello ⭐ 53
CellO: Gene expression-based hierarchical cell type classification using the Cell Ontology
total releases 7most recent commit 9 months ago
Cellnet ⭐ 48
CellNet: network biology applied to stem cell engineering
most recent commit a year ago
Cell2cell ⭐ 44
User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins
most recent commit 5 months ago
Clustering_on_transcript_compatibility_counts ⭐ 40
Clustering cells from single cell RNA seq assays
most recent commit 5 years ago
Scaden ⭐ 40
Deep Learning based cell composition analysis with Scaden.
total releases 13most recent commit 3 years ago
Itclust ⭐ 39
Iterative transfer learning with neural network improves clustering and cell type classification in single-cell RNA-seq analysis
total releases 5most recent commit 2 years ago
Cellsnp ⭐ 37
Pileup biallelic SNPs from single-cell and bulk RNA-seq data
total releases 14most recent commit 3 years ago
Scribe Py ⭐ 36
Regulatory networks with Direct Information in python
most recent commit a year ago
Haystack_bio ⭐ 35
Haystack: Epigenetic Variability and Transcription Factor Motifs Analysis Pipeline
most recent commit 3 years ago
Brie ⭐ 34
BRIE: Bayesian Regression for Isoform Estimate in Single Cells
most recent commit a year ago
Expressionmatrix2 ⭐ 27
Software for exploration of gene expression data from single-cell RNA sequencing.
most recent commit 5 years ago
The 10 Latest Releases In Cell Rna Seq Open Source Projects
Sccatch ⭐ 171
Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data
total releases 5latest release April 23, 2023most recent commit a year ago
Cello ⭐ 53
CellO: Gene expression-based hierarchical cell type classification using the Cell Ontology
total releases 7latest release September 28, 2022most recent commit 9 months ago
Uncurl_python ⭐ 14
UNCURL is a tool for single cell RNA-seq data analysis.
total releases 12latest release June 27, 2022most recent commit 2 years ago
Xpore ⭐ 122
Identification of differential RNA modifications from nanopore direct RNA sequencing
total releases 20latest release October 08, 2021most recent commit 5 months ago
Scaden ⭐ 40
Deep Learning based cell composition analysis with Scaden.
total releases 13latest release June 10, 2021most recent commit 3 years ago
Scnym ⭐ 71
Semi-supervised adversarial neural networks for classification of single cell transcriptomics data
total releases 5latest release March 25, 2021most recent commit 4 months ago
Cellsnp ⭐ 37
Pileup biallelic SNPs from single-cell and bulk RNA-seq data
total releases 14latest release August 03, 2020most recent commit 3 years ago
Scedar ⭐ 27
Single-cell exploratory data analysis for RNA-Seq
total releases 9latest release February 11, 2020most recent commit 3 years ago
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