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The Top 23 R Cancer Open Source Projects

Open source projects categorized as R Cancer
Pcgr ⭐ 234
Personal Cancer Genome Reporter (PCGR)
most recent commit 6 months ago
Genomicdatacommons ⭐ 80
Provide R access to the NCI Genomic Data Commons portal.
most recent commit 3 months ago
Datamicroarray ⭐ 76
A collection of small-sample, high-dimensional microarray data sets to assess machine-learning algorithms and models.
most recent commit 8 years ago
Cpsr ⭐ 50
Cancer Predisposition Sequencing Reporter (CPSR)
most recent commit 9 months ago
Oncoenrichr ⭐ 46
Cancer-dedicated gene set interpretation
most recent commit 8 months ago
Shiny Iatlas ⭐ 36
An interactive web portal for exploring immuno-oncology data
most recent commit 3 years ago
Cancermine ⭐ 36
Text-mined knowledgebase for drivers, oncogenes and tumor suppressors in cancer
most recent commit a year ago
Beyondcell ⭐ 23
Beyondcell is a computational methodology for identifying tumour cell subpopulations with distinct drug responses in single-cell RNA-seq data and proposing cancer-specific treatments.
most recent commit 8 months ago
Cacao ⭐ 22
Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer
most recent commit 3 years ago
Ctdnatools ⭐ 17
R package to work with ctDNA sequencing data
total releases 1most recent commit 2 years ago
Imsig ⭐ 17
Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours
total releases 3most recent commit 3 years ago
Biocancer ⭐ 15
♋ 🆓 A Shiny App for Interactive Multi-OMICS Cancer Data Visualization and analysis
most recent commit a year ago
Misteli Lab Ccr Nci ⭐ 15
Collection of statistical scripts, image analysis workflows, data used in publications by the Misteli Lab.
most recent commit 4 months ago
R_intro ⭐ 11
four class intro to R: basic syntax, data manipulation, data viz
most recent commit 3 years ago
Tmexplorer ⭐ 9
A collection of tumour microenvironment single-cell RNA sequencing datasets for use in R and other pipelines.
most recent commit 2 years ago
Locusexplorer ⭐ 8
An interactive graphical illustration of genetic associations and their biological context
most recent commit 3 years ago
Tcgabiolinks Downloader ⭐ 8
GNU Make-driven workflow to download TCGA data via the TCGAbiolinks package
most recent commit 2 years ago
Gbm_immune_validation ⭐ 8
Validating glioblastoma immune cell immunohistochemsitry using computational deconvolution of TCGA tumors
most recent commit 5 years ago
Hgsc_subtypes ⭐ 8
Two or three subtypes of high grade serous ovarian cancer subtypes fit data from different populations better than four
most recent commit 6 years ago
Crescent ⭐ 7
The CanceR Single Cell ExpressioN Toolkit one-line-command applications.
most recent commit 2 years ago
Curatedpcadata ⭐ 7
Curated Prostate Cancer Data R-package
most recent commit 6 months ago
Cancer ⭐ 6
💹 The package is user friendly interface based on the cgdsr and other modeling packages to explore, compare, and analyse all available Cancer Data (Clinical data, Gene Mutation, Gene Methylation, Gene Expression, Protein Phosphorylation, Copy Number Alteration) hosted by the Computational Biology Center at Memorial-Sloan-Kettering Cancer Center (MSKCC).
most recent commit 2 years ago
Csurvival ⭐ 5
cSurvival: a web resource for biomarker interactions in cancer outcomes and in cell lines
most recent commit 7 months ago
The 2 Latest Releases In R Cancer Open Source Projects
Imsig ⭐ 17
Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours
total releases 3latest release January 10, 2021most recent commit 3 years ago
Ctdnatools ⭐ 17
R package to work with ctDNA sequencing data
total releases 1latest release March 04, 2020most recent commit 2 years ago
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