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The Top 23 Python Cancer Open Source Projects

Open source projects categorized as Python Cancer
Deepslide ⭐ 449
Code for the Nature Scientific Reports paper "Pathologist-level classification of histologic patterns on resected lung adenocarcinoma slides with deep neural networks." A sliding window framework for classification of high resolution whole-slide images, often microscopy or histopathology images.
most recent commit 7 months ago
Pygeno ⭐ 242
Personalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs
total releases 18most recent commit 4 years ago
Healthcheck ⭐ 58
Health Check ✔ is a Machine Learning Web Application made using Flask that can predict mainly three diseases i.e. Diabetes, Heart Disease, and Cancer.
most recent commit 3 years ago
Agfusion ⭐ 46
Python package to annotate and visualize gene fusions.
dependent packages 1total releases 38most recent commit a year agopypi agfusion} Downloads
Cancer Donation Portal Python Flask App ⭐ 41
Flask App for Cancer Donation Portal using basic Python, SQLite3, HTML, CSS and Javascript
most recent commit 3 months ago
2020plus ⭐ 39
Classifies genes as an oncogene, tumor suppressor gene, or as a non-driver gene by using Random Forests
most recent commit 4 years ago
Classifying Cancer ⭐ 29
A Python-Tensorflow neural network for classifying cancer data
most recent commit 7 years ago
Histopathologic_cancer_detector ⭐ 25
CNN histopathologic tumor identifier.
most recent commit 3 years ago
Kg4sl ⭐ 25
Synthetic lethality (SL) is a promising gold mine for the discovery of anti-cancer drug targets. KG4SL is the first graph neural network (GNN)-based model that uses knowledge graph for SL prediction.
most recent commit 9 months ago
Civicmine ⭐ 19
Text mining cancer biomarkers for the CIVIC database
most recent commit a year ago
Pegasas ⭐ 14
Pathway Enrichment-Guided Activity Study of Alternative Splicing (PEGASAS)
most recent commit 2 years ago
Pasmopy ⭐ 14
Patient-Specific Modeling in Python
total releases 16most recent commit 8 months ago
Omiembed ⭐ 12
Multi-task deep learning framework for multi-omics data analysis
most recent commit 2 years ago
Sigma ⭐ 11
SigMa is a probabilistic model for the sequential dependencies of mutation signatures
most recent commit 5 years ago
Emmaa ⭐ 10
Ecosystem of Machine-maintained Models with Automated Analysis
total releases 15most recent commit 10 months ago
Isotope ⭐ 10
ISOform-guided prediction of epiTOPEs in cancer
most recent commit a year ago
Hotmaps ⭐ 10
Detects hotspot regions for somatic mutations in 3D protein structures
most recent commit 6 years ago
Trisicell ⭐ 9
Scalable tumor phylogeny inference and validation from single-cell RNA or DNA data
total releases 25most recent commit 4 months ago
Capstone ⭐ 8
most recent commit 6 years ago
Cancerdiagnosis Teachingmaterial ⭐ 7
Detect whether a tumor is benign or cancerous
most recent commit 2 years ago
Skincancerdetection ⭐ 7
🔍 Skin cancer detection with pretrained CNN ported to front-end.
most recent commit 2 years ago
Cancerous_cells_scans_processing ⭐ 7
Predict survival time from PET scans
most recent commit 5 years ago
Multifactorial Immune Response ⭐ 7
Multifactorial modeling of response to checkpoint inhibitor immunotherapy from tumor, immune, and clinical features
most recent commit 6 years ago
The 7 Latest Releases In Python Cancer Open Source Projects
Scphylo Tools ⭐ 5
a python toolkit for single-cell tumor phylogenetic analysis
total releases 5latest release July 26, 2023most recent commit 4 months ago
Trisicell ⭐ 9
Scalable tumor phylogeny inference and validation from single-cell RNA or DNA data
total releases 25latest release July 21, 2023most recent commit 4 months ago
Agfusion ⭐ 46
Python package to annotate and visualize gene fusions.
dependent packages 1total releases 38latest release February 10, 2023most recent commit a year agopypi agfusion} Downloads
Pasmopy ⭐ 14
Patient-Specific Modeling in Python
total releases 16latest release June 16, 2022most recent commit 8 months ago
Pygeno ⭐ 242
Personalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs
total releases 18latest release December 15, 2021most recent commit 4 years ago
Emmaa ⭐ 10
Ecosystem of Machine-maintained Models with Automated Analysis
total releases 15latest release August 01, 2021most recent commit 10 months ago
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