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The Top 23 R Cancer Genomics Open Source Projects

Open source projects categorized as R Cancer Genomics
Categories > Science > Cancer Genomics
Maftools ⭐ 400
Summarize, Analyze and Visualize MAF files from TCGA or in-house studies.
most recent commit 3 months ago
Pcgr ⭐ 234
Personal Cancer Genome Reporter (PCGR)
most recent commit 6 months ago
Numbat ⭐ 122
Haplotype-aware CNV analysis from single-cell RNA-seq
total releases 7most recent commit 6 months ago
Palimpsest ⭐ 56
An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.
most recent commit 3 years ago
Revolver ⭐ 53
REVOLVER - Repeated Evolution in Cancer
most recent commit 2 years ago
Cpsr ⭐ 50
Cancer Predisposition Sequencing Reporter (CPSR)
most recent commit 9 months ago
Cbioportaldata ⭐ 29
Integrate the cancer genomics portal, cBioPortal, using MultiAssayExperiment
most recent commit 3 months ago
Sevenbridges R ⭐ 27
Seven Bridges API Client, CWL Schema, Meta Schema, and SDK Helper in R
most recent commit 3 years ago
Clonealign ⭐ 25
Bayesian inference of clone-specific gene expression estimates by integrating single-cell RNA-seq and single-cell DNA-seq data
most recent commit 3 years ago
Cacao ⭐ 22
Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer
most recent commit 3 years ago
Cfdnapro ⭐ 20
cfDNAPro specializes in standardized and robust cfDNA fragmentomic analysis
most recent commit 7 months ago
Cgdsr ⭐ 18
R-Based API for accessing the MSKCC Cancer Genomics Data Server (CGDS)
dependent packages 1total releases 19most recent commit 3 years ago
Sigprofilermatrixgeneratorr ⭐ 17
R wrapper for utilizing the SigProfilerMatrixGenerator framework
most recent commit a year ago
Biocancer ⭐ 15
♋ 🆓 A Shiny App for Interactive Multi-OMICS Cancer Data Visualization and analysis
most recent commit a year ago
Sigprofilerextractorr ⭐ 11
An R wrapper for SigProfilerExtractor that allows de novo extraction of mutational signatures from data generated in a matrix format. The tool identifies the number of operative mutational signatures, their activities in each sample, and the probability for each signature to cause a specific mutation type in a cancer sample. The tool makes use of SigProfilerMatrixGenerator and SigProfilerPlotting.
most recent commit a year ago
Ectmb ⭐ 10
most recent commit 3 years ago
Bioconcotk ⭐ 9
Bioconductor components for general cancer genomics
most recent commit a year ago
Gpgr ⭐ 8
📚 Genomics Platform Group Reporter
most recent commit 8 months ago
Consensustme ⭐ 8
ConsensusTME Gene Sets and R Script
most recent commit 4 years ago
Pc_cna_signature ⭐ 8
Prostate Cancer Alteration Signature Analysis
most recent commit 3 years ago
Scnova ⭐ 7
scNOVA : Single-Cell Nucleosome Occupancy and genetic Variation Analysis
most recent commit 9 months ago
Curatedpcadata ⭐ 7
Curated Prostate Cancer Data R-package
most recent commit 6 months ago
Geneoncox ⭐ 6
Human gene annotations for the oncology domain
most recent commit 3 months ago
The 3 Latest Releases In R Cancer Genomics Open Source Projects
Tidyestimate ⭐ 6
ESTIMATE tumor infiltration, the tidy way
total releases 3latest release August 21, 2023most recent commit 8 months ago
Numbat ⭐ 122
Haplotype-aware CNV analysis from single-cell RNA-seq
total releases 7latest release June 17, 2023most recent commit 6 months ago
Cgdsr ⭐ 18
R-Based API for accessing the MSKCC Cancer Genomics Data Server (CGDS)
dependent packages 1total releases 19latest release June 26, 2019most recent commit 3 years ago
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