The Top 7 Python Cancer Genomics Somatic Variants Open Source Projects

Open source projects categorized as Python Cancer Genomics Somatic Variants

Categories > Science > Cancer Genomics

Categories > Programming Languages > Python

Categories > Somatic Variants

Somaticseq ⭐ 185

An ensemble approach to accurately detect somatic mutations using SomaticSeq

total releases 1most recent commit 6 months ago

Sigprofilerextractor ⭐ 132

SigProfilerExtractor allows de novo extraction of mutational signatures from data generated in a matrix format. The tool identifies the number of operative mutational signatures, their activities in each sample, and the probability for each signature to cause a specific mutation type in a cancer sample. The tool makes use of SigProfilerMatrixGenerator and SigProfilerPlotting.

dependent packages 3total releases 50most recent commit 5 months ago

Sigprofilermatrixgenerator ⭐ 91

SigProfilerMatrixGenerator creates mutational matrices for all types of somatic mutations. It allows downsizing the generated mutations only to parts for the genome (e.g., exome or a custom BED file). The tool seamlessly integrates with other SigProfiler tools.

dependent packages 10total releases 102most recent commit 3 months ago

pypi SigProfilerMatrixGenerator} Downloads

Sv Callers ⭐ 52

Snakemake-based workflow for detecting structural variants in genomic data

most recent commit a year ago

Sigprofilerplotting ⭐ 43

SigProfilerPlotting provides a standard tool for displaying all types of mutational signatures as well as all types of mutational patterns in cancer genomes. The tool seamlessly integrates with other SigProfiler tools.

dependent packages 9total releases 86most recent commit 5 months ago

Sigprofilersimulator ⭐ 18

SigProfilerSimulator allows realistic simulations of mutational patterns and mutational signatures in cancer genomes. The tool can be used to simulate signatures of single point mutations, double point mutations, and insertion/deletions. Further, the tool makes use of SigProfilerMatrixGenerator and SigProfilerPlotting.

most recent commit 7 months ago

Sigprofilertopography ⭐ 13

SigProfilerTopography allows evaluating the effect of chromatin organization, histone modifications, transcription factor binding, DNA replication, and DNA transcription on the activities of different mutational processes. SigProfilerTopography elucidates the unique topographical characteristics of mutational signatures.

dependent packages 1total releases 250most recent commit 3 months ago

The 4 Most Depended On Python Cancer Genomics Somatic Variants Open Source Projects

Sigprofilermatrixgenerator ⭐ 91

dependent packages 10total releases 102latest release October 02, 2023most recent commit 3 months ago

Sigprofilerplotting ⭐ 43

dependent packages 9total releases 86latest release November 18, 2023most recent commit 5 months ago

Sigprofilerextractor ⭐ 132

dependent packages 3total releases 50latest release November 21, 2023most recent commit 5 months ago

Sigprofilertopography ⭐ 13

dependent packages 1total releases 250latest release December 03, 2023most recent commit 3 months ago

The 5 Latest Releases In Python Cancer Genomics Somatic Variants Open Source Projects

Sigprofilertopography ⭐ 13

dependent packages 1total releases 250latest release December 03, 2023most recent commit 3 months ago

Sigprofilerextractor ⭐ 132

dependent packages 3total releases 50latest release November 21, 2023most recent commit 5 months ago

Sigprofilerplotting ⭐ 43

dependent packages 9total releases 86latest release November 18, 2023most recent commit 5 months ago

Sigprofilermatrixgenerator ⭐ 91

dependent packages 10total releases 102latest release October 02, 2023most recent commit 3 months ago

Somaticseq ⭐ 185

An ensemble approach to accurately detect somatic mutations using SomaticSeq

total releases 1latest release May 04, 2022most recent commit 6 months ago

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