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The Top 7 Cancer Genomics Mutation Analysis Open Source Projects

Open source projects categorized as Cancer Genomics Mutation Analysis
Categories > Science > Cancer Genomics
Categories > Mutation Analysis
Sigprofilerextractor ⭐ 132
SigProfilerExtractor allows de novo extraction of mutational signatures from data generated in a matrix format. The tool identifies the number of operative mutational signatures, their activities in each sample, and the probability for each signature to cause a specific mutation type in a cancer sample. The tool makes use of SigProfilerMatrixGenerator and SigProfilerPlotting.
dependent packages 3total releases 50most recent commit 5 months agopypi SigProfilerExtractor} Downloads
Sigprofilermatrixgenerator ⭐ 91
SigProfilerMatrixGenerator creates mutational matrices for all types of somatic mutations. It allows downsizing the generated mutations only to parts for the genome (e.g., exome or a custom BED file). The tool seamlessly integrates with other SigProfiler tools.
dependent packages 10total releases 102most recent commit 3 months agopypi SigProfilerMatrixGenerator} Downloads
Sigprofilerplotting ⭐ 43
SigProfilerPlotting provides a standard tool for displaying all types of mutational signatures as well as all types of mutational patterns in cancer genomes. The tool seamlessly integrates with other SigProfiler tools.
dependent packages 9total releases 86most recent commit 5 months agopypi sigProfilerPlotting} Downloads
Sigprofilermatrixgeneratorr ⭐ 17
R wrapper for utilizing the SigProfilerMatrixGenerator framework
most recent commit a year ago
Sigprofilertopography ⭐ 13
SigProfilerTopography allows evaluating the effect of chromatin organization, histone modifications, transcription factor binding, DNA replication, and DNA transcription on the activities of different mutational processes. SigProfilerTopography elucidates the unique topographical characteristics of mutational signatures.
dependent packages 1total releases 250most recent commit 3 months agopypi SigProfilerTopography} Downloads
Sigprofilerextractorr ⭐ 11
An R wrapper for SigProfilerExtractor that allows de novo extraction of mutational signatures from data generated in a matrix format. The tool identifies the number of operative mutational signatures, their activities in each sample, and the probability for each signature to cause a specific mutation type in a cancer sample. The tool makes use of SigProfilerMatrixGenerator and SigProfilerPlotting.
most recent commit a year ago
Sigprofilerclusters ⭐ 8
Tool for analyzing the inter-mutational distances between SNV-SNV and INDEL-INDEL mutations. Tool separates mutations into clustered and non-clustered groups on a sample-dependent basis.
most recent commit 5 months ago
The 4 Most Depended On Cancer Genomics Mutation Analysis Open Source Projects
The 4 Latest Releases In Cancer Genomics Mutation Analysis Open Source Projects
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