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The Top 18 C Ngs Open Source Projects

Open source projects categorized as C Ngs
Ngs ⭐ 1,252
Next Generation Shell (NGS)
most recent commit 3 months ago
Sra Tools ⭐ 1,015
SRA Tools
total releases 1most recent commit 3 months ago
Mutscan ⭐ 127
Detect and visualize target mutations by scanning FastQ files directly
most recent commit 2 years ago
Player2d ⭐ 83
Educational demo implementing a swept 2D character controller
most recent commit 5 months ago
Burst ⭐ 54
An ultrafast optimal aligner for mapping large NGS data to large genome databases.
most recent commit 8 months ago
Uniquekmer ⭐ 33
Generate unique KMERs for every contig in a FASTA file
most recent commit 2 years ago
Hpg Aligner ⭐ 32
HPG Aligner is an ultrafast and highly sensitive Next-Generation Sequencing (NGS) mapper which supoprts both DNA and RNA alignment
most recent commit 7 years ago
Fastq_utils ⭐ 29
Validation and manipulation of FASTQ files, scRNA-seq barcode pre-processing and UMI quantification.
most recent commit a year ago
Allelecount ⭐ 23
Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each allele [ACGT] at that location (given any filter settings)
most recent commit 3 years ago
Kart ⭐ 21
Kart: A divide-and-conquer algorithm for NGS read mapping with high error tolerance
most recent commit 4 years ago
Ngsf ⭐ 18
Estimation of per-individual inbreeding coefficients under a probabilistic framework
most recent commit 8 months ago
Lava ⭐ 13
LAVA: Lightweight Assignment of Variant Alleles
most recent commit 6 years ago
Cellcoal ⭐ 11
CellCoal: coalescent simulation of single-cell NGS genotypes
most recent commit a year ago
Hpg Methyl ⭐ 7
An ultrafast and highly sensitive Next-Generation Sequencing (NGS) read mapper and methylation extractor.
most recent commit 2 years ago
Malva ⭐ 7
genotyping by Mapping-free ALternate-allele detection of known VAriants
most recent commit 2 years ago
Game05 ⭐ 6
Windows, OSX, iOS GLSL starter kit.
most recent commit 9 years ago
Stringmeup ⭐ 5
A post-processing tool to reclassify Kraken 2 output based on the confidence score and/or minimum minimizer hit groups.
most recent commit 3 years ago
Mpisort ⭐ 5
mpi implementation of sorting NGS data
most recent commit 4 years ago
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