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The Top 23 C Genome Open Source Projects

Open source projects categorized as C Genome
Star ⭐ 1,647
RNA-seq aligner
most recent commit 4 months ago
Bedtools2 ⭐ 876
bedtools - the swiss army knife for genome arithmetic
total releases 1most recent commit 3 months ago
Genometools ⭐ 261
GenomeTools genome analysis system.
most recent commit 5 months ago
Pyfastx ⭐ 211
a python package for fast random access to sequences from plain and gzipped FASTA/Q files
dependent packages 20total releases 68most recent commit 5 months agopypi pyfastx} Downloads
Giggle ⭐ 207
Interval data structure
most recent commit a year ago
Kent ⭐ 197
UCSC Genome Browser source tree. Stable branch: "beta".
most recent commit 3 months ago
Soapdenovo2 ⭐ 197
Next generation sequencing reads de novo assembler.
most recent commit 5 months ago
Genrich ⭐ 158
Detecting sites of genomic enrichment
most recent commit a year ago
Lancet ⭐ 145
Microassembly based somatic variant caller for NGS data
most recent commit 2 years ago
Winnowmap ⭐ 131
Long read / genome alignment software
most recent commit 2 years ago
Pufferfish ⭐ 104
An efficient index for the colored, compacted, de Bruijn graph
most recent commit 10 months ago
Minimap ⭐ 101
This repo is DEPRECATED. Please use minimap2, the successor of minimap.
most recent commit 7 years ago
Mccortex ⭐ 86
De novo genome assembly and multisample variant calling
most recent commit 5 years ago
Genefuse ⭐ 86
Gene fusion detection and visualization
most recent commit 2 years ago
Penncnv ⭐ 84
Copy number vaiation detection from SNP arrays
most recent commit 4 months ago
Hera ⭐ 74
most recent commit 5 years ago
Mocha ⭐ 70
MOsaic CHromosomal Alterations (MoChA) caller
most recent commit 4 months ago
Fermi ⭐ 68
A WGS de novo assembler based on the FMD-index for large genomes
most recent commit 10 years ago
Crisporwebsite ⭐ 64
All source code of the crispor.org website
most recent commit 3 months ago
Genomealignmenttools ⭐ 49
Tools for improving the sensitivity and specificity of genome alignments
most recent commit 3 months ago
Pauvre ⭐ 43
Pauvre: QC and genome browser plotting Oxford Nanopore and PacBio long reads.
dependent packages 2total releases 27most recent commit a year agopypi pauvre} Downloads
Snap ⭐ 41
Gene prediction software
most recent commit a year ago
Lrsim ⭐ 38
10x Genomics Reads Simulator
most recent commit 5 years ago
The 2 Most Depended On C Genome Open Source Projects
Pyfastx ⭐ 211
a python package for fast random access to sequences from plain and gzipped FASTA/Q files
dependent packages 20total releases 68latest release November 25, 2023most recent commit 5 months agopypi pyfastx} Downloads
Pauvre ⭐ 43
Pauvre: QC and genome browser plotting Oxford Nanopore and PacBio long reads.
dependent packages 2total releases 27latest release May 04, 2021most recent commit a year agopypi pauvre} Downloads
The 4 Latest Releases In C Genome Open Source Projects
Pyfastx ⭐ 211
a python package for fast random access to sequences from plain and gzipped FASTA/Q files
dependent packages 20total releases 68latest release November 25, 2023most recent commit 5 months agopypi pyfastx} Downloads
Pauvre ⭐ 43
Pauvre: QC and genome browser plotting Oxford Nanopore and PacBio long reads.
dependent packages 2total releases 27latest release May 04, 2021most recent commit a year agopypi pauvre} Downloads
Bedtools2 ⭐ 876
bedtools - the swiss army knife for genome arithmetic
total releases 1latest release March 03, 2021most recent commit 3 months ago
Mashing Pumpkins ⭐ 19
Minhash and maxhash library in Python, combining flexibility, expressivity, and performance.
total releases 5latest release December 20, 2018most recent commit 4 months ago
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