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The Top 23 C Plus Plus Vcf Open Source Projects

Open source projects categorized as C Plus Plus Vcf
Categories > Programming Languages > C Plus Plus
Categories > Science > Vcf
Vg ⭐ 1,022
tools for working with genome variation graphs
most recent commit 3 months ago
Nucleus ⭐ 675
Python and C++ code for reading and writing genomics data.
dependent packages 2total releases 18most recent commit 3 years agopypi google-nucleus} Downloads
Nanopolish ⭐ 496
Signal-level algorithms for MinION data
most recent commit 8 months ago
Vcftools ⭐ 415
A set of tools written in Perl and C++ for working with VCF files, such as those generated by the 1000 Genomes Project.
most recent commit a year ago
Survivor ⭐ 299
Toolset for SV simulation, comparison and filtering
most recent commit 5 months ago
Hap.py ⭐ 283
Haplotype VCF comparison tools
most recent commit 2 years ago
Svaba ⭐ 211
Structural variation and indel detection by local assembly
most recent commit 6 months ago
Poplddecay ⭐ 138
PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format(VCF) files
most recent commit 2 years ago
Smcpp ⭐ 131
SMC++ infers population history from whole-genome sequence data.
most recent commit 4 months ago
Dsuite ⭐ 123
Fast calculation of Patterson's D (ABBA-BABA) and the f4-ratio statistics across many populations/species
most recent commit 6 months ago
Gw ⭐ 118
Genome browser and variant annotation
most recent commit 3 months ago
Pandora ⭐ 98
Pan-genome inference and genotyping with long noisy or short accurate reads
most recent commit 4 months ago
Tiledb Vcf ⭐ 79
Efficient variant-call data storage and retrieval library using the TileDB storage library.
most recent commit 3 months ago
Spvcf ⭐ 54
Sparse Project VCF: evolution of VCF to encode population genotype matrices efficiently
most recent commit 6 months ago
Minimac4 ⭐ 50
most recent commit 4 months ago
Vcfdist ⭐ 48
vcfdist: Accurately benchmarking phased variant calls
most recent commit 3 months ago
Glia ⭐ 34
a string to graph aligner
most recent commit 8 years ago
Popdel ⭐ 32
Population-wide Deletion Calling
most recent commit a year ago
Ngsrelate ⭐ 31
most recent commit 4 months ago
Sviper ⭐ 28
Swipe your Structural Variants called on long (ONT/PacBio) reads with short exact (Illumina) reads.
most recent commit 2 years ago
Hapbin ⭐ 27
Efficient program for calculating Extended Haplotype Homozygosity (EHH) and Integrated Haplotype Score (iHS)
most recent commit 4 years ago
Leviosam ⭐ 27
Lift-over alignments from variant-aware references
most recent commit 2 years ago
Mergesvcallers ⭐ 26
heuristics to merge structural variant calls in VCF format.
most recent commit 8 years ago
The 2 Latest Releases In C Plus Plus Vcf Open Source Projects
Nucleus ⭐ 675
Python and C++ code for reading and writing genomics data.
dependent packages 2total releases 18latest release August 31, 2021most recent commit 3 years agopypi google-nucleus} Downloads
Ngs_server ⭐ 7
Ultra Lightweight NGS (BAM/VCF) Server
total releases 10latest release June 04, 2012most recent commit 12 years ago
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