Awesome Open Source
Search
Programming Languages
Languages
All Categories
Categories
About

The Top 23 C Plus Plus Genome Open Source Projects

Open source projects categorized as C Plus Plus Genome
Categories > Programming Languages > C Plus Plus
Categories > Science > Genome
Vg ⭐ 1,022
tools for working with genome variation graphs
most recent commit 3 months ago
Canu ⭐ 613
A single molecule sequence assembler for genomes large and small.
most recent commit 3 months ago
Bowtie2 ⭐ 594
A fast and sensitive gapped read aligner
most recent commit 3 months ago
Nanopolish ⭐ 496
Signal-level algorithms for MinION data
most recent commit 8 months ago
Hifiasm ⭐ 443
Hifiasm: a haplotype-resolved assembler for accurate Hifi reads
most recent commit 3 months ago
Megahit ⭐ 442
Ultra-fast and memory-efficient (meta-)genome assembler
most recent commit a year ago
Unicycler ⭐ 428
hybrid assembly pipeline for bacterial genomes
most recent commit a year ago
Vcftools ⭐ 415
A set of tools written in Perl and C++ for working with VCF files, such as those generated by the 1000 Genomes Project.
most recent commit a year ago
Hisat2 ⭐ 345
Graph-based alignment (Hierarchical Graph FM index)
most recent commit 2 years ago
Rsem ⭐ 332
RSEM: accurate quantification of gene and isoform expression from RNA-Seq data
most recent commit a year ago
Fastani ⭐ 301
Fast Whole-Genome Similarity (ANI) Estimation
most recent commit 8 months ago
Multineat ⭐ 289
Portable NeuroEvolution Library
most recent commit 5 years ago
Hap.py ⭐ 283
Haplotype VCF comparison tools
most recent commit 2 years ago
Abyss ⭐ 276
🔬 Assemble large genomes using short reads
most recent commit 8 months ago
Mashmap ⭐ 243
A fast approximate aligner for long DNA sequences
most recent commit 4 months ago
Augustus ⭐ 237
Genome annotation with AUGUSTUS
most recent commit 4 months ago
Ngmlr ⭐ 230
NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on reads that span structural variations
most recent commit 3 years ago
Centrifuge ⭐ 215
Classifier for metagenomic sequences
most recent commit 7 months ago
Gemma ⭐ 215
Genome-wide Efficient Mixed Model Association
most recent commit 10 months ago
Krakenuniq ⭐ 201
🐙 KrakenUniq: Metagenomics classifier with unique k-mer counting for more specific results
most recent commit 3 months ago
Raven ⭐ 177
De novo genome assembler for long uncorrected reads
most recent commit 5 months ago
Aligngraph ⭐ 165
Algorithm for secondary de novo genome assembly guided by closely related references
most recent commit 4 years ago
Regenie ⭐ 148
regenie is a C++ program for whole genome regression modelling of large genome-wide association studies.
most recent commit 4 months ago
The 2 Most Depended On C Plus Plus Genome Open Source Projects
Liftover ⭐ 51
liftover for python, made fast with cython
dependent packages 8total releases 20latest release November 02, 2023most recent commit 6 months agopypi liftover} Downloads
Asmc ⭐ 7
Ascertained Sequentially Markovian Coalescent
dependent packages 1total releases 4latest release September 28, 2021most recent commit 7 months agopypi asmc-asmc} Downloads
The 5 Latest Releases In C Plus Plus Genome Open Source Projects
Liftover ⭐ 51
liftover for python, made fast with cython
dependent packages 8total releases 20latest release November 02, 2023most recent commit 6 months agopypi liftover} Downloads
Jackalope ⭐ 8
A swift, versatile phylogenomic and high-throughput sequencing simulator
total releases 10latest release October 15, 2023most recent commit 5 months ago
Asmc ⭐ 7
Ascertained Sequentially Markovian Coalescent
dependent packages 1total releases 4latest release September 28, 2021most recent commit 7 months agopypi asmc-asmc} Downloads
Arv ⭐ 75
A fast 23andMe DNA parser and inferrer for Python
total releases 11latest release March 29, 2017most recent commit 4 years ago
Swga ⭐ 16
Select primer sets for selective whole genome amplification (SWGA)
total releases 1latest release November 20, 2015most recent commit 5 years ago
Popular Programming Languages Categories
Python
Javascript
Java
Typescript
C Plus Plus
Php
Golang
C
C Sharp
Shell
Categories
Privacy | About | Terms | Follow Us On Twitter

Downloads, Dependent Repos, Dependent Packages, Total Releases, Latest Releases data powered by Libraries.io.

Copyright 2018-2024 Awesome Open Source.  All rights reserved.