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The Top 14 Bulk Rna Seq Open Source Projects

Open source projects categorized as Bulk Rna Seq
Categories > Bulk Rna Seq
Omicverse ⭐ 159
A python library for multi omics included bulk and single cell RNA-seq analysis.
dependent packages 2total releases 32most recent commit 3 months agopypi Pyomic} Downloads
Ecotyper ⭐ 118
EcoTyper is a machine learning framework for large-scale identification of cell states and cellular ecosystems from gene expression data.
most recent commit 7 months ago
Rna Bloom ⭐ 66
🌺 reference-free transcriptome assembly for short and long reads
most recent commit 8 months ago
Irap ⭐ 58
integrated RNA-seq Analysis Pipeline
most recent commit 5 years ago
Cell2cell ⭐ 44
User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins
most recent commit 5 months ago
Workflows Nextflow ⭐ 17
Workflow management with Nextflow and nf-core
most recent commit 3 months ago
Dseqr ⭐ 15
single-cell and bulk RNA-seq analyses from counts → pathways → drug candidates.
most recent commit 8 months ago
Bioc Rnaseq ⭐ 14
Analysis and Interpretation of Bulk RNA-Seq Data using Bioconductor
most recent commit 4 months ago
Gear ⭐ 10
The gEAR Portal was created as a data archive and viewer for gene expression data including microarrays, bulk RNA-Seq, single-cell RNA-Seq and more.
most recent commit 5 months ago
Deseq2shiny ⭐ 8
a web-based R shiny application that wraps DESeq2 R package
most recent commit 4 years ago
Appliedbioinformatics2023 ⭐ 6
"Applied bioinformatics" is a course for Genetics Master Program at Genetics Department
most recent commit 6 months ago
2020_grant ⭐ 6
Code base for the Grant, Morales-Nebreda, and Markov et al., “Circuits between infected macrophages and T cells in SARS-CoV-2 pneumonia” Nature (2021) paper
most recent commit 9 months ago
Genocraft ⭐ 5
GenoCraft: A Comprehensive, User-Friendly Web-Based Platform for High-Throughput Omics Data Analysis and Visualization
most recent commit 5 months ago
Bulkrna ⭐ 5
Dalmolin Group's workflow for pre-processing, alignment and quantification of bulk RNA-seq data
most recent commit a year ago
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