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The Top 23 Biology Open Source Projects

Open source projects categorized as Biology
Categories > Science > Biology
Caleydo ⭐ 57
Caleydo - Visualization for Molecular Biology
most recent commit 7 years ago
Msmbstyle ⭐ 57
Tufte inspired bookdown template
most recent commit 2 years ago
Flexidot ⭐ 56
Highly customizable, ambiguity-aware dotplots for visual sequence analyses
most recent commit 3 years ago
Aquarium ⭐ 55
The Aquarium Lab Operating System
most recent commit 3 months ago
Gecko ⭐ 54
Toolbox for including enzyme constraints on a genome-scale model.
dependent packages 1total releases 11most recent commit 3 months agopypi geckopy} Downloads
Awesome Structural Bioinformatics ⭐ 54
Structural Bioinformatics is awesome. Throw your textbook in the garbage, light the garbage can on fire, and blend the ashes into your cold brew almond milk latte and read this.
most recent commit a year ago
Github Paper ⭐ 53
Plos in Computational Biology paper related with github for researchers, code, source and document
most recent commit 8 years ago
Cath Tools ⭐ 51
Protein structure comparison tools such as SSAP and SNAP
most recent commit 5 months ago
Bioalignments.jl ⭐ 51
Sequence alignment tools
most recent commit a year ago
Ibiosim ⭐ 50
iBioSim is a computer-aided design (CAD) tool aimed for the modeling, analysis, and design of genetic circuits. It is capable of importing and exporting models specified using the Systems Biology Markup Language (SBML). iBioSim also supports the Synthetic Biology Open Language (SBOL), an emerging standard for information exchange in synthetic biology.
most recent commit a year ago
Appliedgenomics2017 ⭐ 49
JHU EN.600.649: Computational Genomics: Applied Comparative Genomics
most recent commit 6 years ago
Macrel ⭐ 48
Predict AMPs in (meta)genomes and peptides
most recent commit 4 months ago
Newt ⭐ 48
A web application to visualize and edit pathway models
most recent commit 9 months ago
Full_spectrum_bioinformatics ⭐ 47
An open-access bioinformatics text
most recent commit 3 months ago
Bioblender21 ⭐ 47
Blender plugin to process biological data and molecular work.
most recent commit 2 years ago
Cellbox ⭐ 47
CellBox: Interpretable Machine Learning for Perturbation Biology
most recent commit 9 months ago
Biobroom ⭐ 47
Tidy up computational biology objects
most recent commit 5 years ago
Platetools ⭐ 47
An R package for plotting microtitre plates
total releases 5most recent commit a year ago
Deep Neural Networks Healthcare ⭐ 46
Tangible and Practical Deep Learning Projects Repository for Healthcare such as Cancer, Drug Discovery, Genomic and More
most recent commit 6 years ago
L2p Gnn ⭐ 46
Codes and datasets for AAAI-2021 paper "Learning to Pre-train Graph Neural Networks"
most recent commit 3 years ago
Libapr ⭐ 45
Library for producing and processing on the Adaptive Particle Representation (APR).
most recent commit 5 months ago
Bistro ⭐ 44
A library to build and execute typed scientific workflows
most recent commit 10 months ago
Awesome Expectations ⭐ 43
Examples of great academic lab expectations, manuals, policies for joining and being in the lab
most recent commit 5 years ago
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